CENTURI Multi-Engineering Platform

Unité d'appui et de recherche (UAR 2027)

Overview of the platform

Submitted projects

Ongoing projects

Publications

One major objective of CENTURI is to involve engineers in the experimental and conceptual challenges of systems biology, while developing industrial partnerships.

The Multi-Engineering Platform CENTURI (UAR 2027) has been created to provide additional expertise in image processing, bioinformatics, machine learning & data analysis, software development and mechatronics. Our engineers are here to help and advise the scientific community in their daily research questions and/or participate in longer term projects. By organising events and connecting different CENTURI labs, the platform hopes to build a strong cooperative spirit and facilitate the dissemination of information between the teams and the platform.

Our engineers

BIOINFORMATICS

Thomas Vannier - Bioinformatics Data Analyst - thomas.vannier@univ-amu.fr

Keywords: Bioinformatics, Omics analysis, Genomics, Transcriptomics, Proteomics, Metagenomics, Metatranscriptomics & Biostatistics.

His profile: https://centuri-livingsystems.org/t-vannier

Léa Chabot - Bioinformatics Engineer - lea.chabot@univ-amu.fr

Keywords: Bioinformatics, Biostatistics, Bulk or Single-cell RNA-seq, Phylogenetics ,Next Generation Sequencing

Her profile: https://centuri-livingsystems.org/l-chabot/

IMAGE DATA PROCESSING

MECHATRONICS

Mathias Lechelon - Mechatronics - mathias.lechelon@univ-amu.fr

Keywords: Mechatronics, Prototyping, Computer-Aided Design (CAD), Computer-Aided Manufacturing (CAM), 3D printing, Laser cutting, CNC router, Microcontrolers, Arduino boards, RaspberryPi, Automatization.

His profile: https://centuri-livingsystems.org/m-lechelon

Fabrice Dessolis - Mechatronics Engineer - fabrice.DESSOLIS@univ-amu.fr

Keywords :

Mechanics : CAD design, manufacturing, materials, 3D printing
Electronics : CAD design, PCB soldering, microcontrollers
Programming : Python, C++ (GUI design, hardware control, automation)

His profile: https://centuri-livingsystems.org/f-dessolis/

MACHINE LEARNING & DATA ANALYSIS

SOFTWARE DEVELOPMENT

Alumni

Pierre Bohec - Microfluidics pierre.bohec@univ-amu.fr

His profile: https://centuri-livingsystems.org/p-bohec/

Asemare Taddese - Optics & Biophotonics

asemare-mengistie.taddese@univ-amu.fr

His profile: https://centuri-livingsystems.org/a-taddese/

Thomas Boudier - BioImage Informatics thomas.boudier@univ-amu.fr

Key words: Segmentation, Image processing, Image analysis, Automation, Tracking, ImageJ, Fiji, Java.

His profile: https://centuri-livingsystems.org/t-boudier/

Benoit Dehapiot - Image processing & data analysis - benoit.dehapiot@univ-amu.fr

Key words: Biological sample imaging (optical microscopy), Fluorescence quantification, Object segmentation, Flow measurement, Signal processing

His profile: https://centuri-livingsystems.org/b-dehapiot/

Muhammad Asif - Bioinformatics Data Analyst - muhammad.asif@univ-amu.fr

Key words: Bioinformatics, Systems Biology, machine learning, Network Biology, 16s analysis, bulk or single-cell RNA seq, text mining, and node/graph embedding

His profile: https://centuri-livingsystems.org/m-asif/

Guillaume Gay - Database management and data curation - guillaume.gay.1@univ-amu.fr

Keywords: Omero, Data curation, Database, Python, SciPy, Jupyter

His profile: https://centuri-livingsystems.org/g-gay/

Sophie Brustlein - Optics & Biophotonics - sophie.brustlein@univ-amu.fr

Keywords: design setups, ensure their development in an optimal, methodical and robust way, , ensure their technological transfer, write operating, use and safety protocols and rules train users , identify specific needs, study feasibility

Her profile: https://centuri-livingsystems.org/s-brustlein/

Qingzong Tseng - Image processing & data analysis - qingzong.TSENG@univ-amu.fr

Key words: Traction Force Microscopy, Particle Imaging Velocimetry (PIV), Template Matching, Image Segmentation, Data Visualization, Machine Learning, Time-series Analysis, Image Cytometer, Signal Processing

His profile: https://centuri-livingsystems.org/q-tseng/

Masoud A. Sharbaf - Software developer & data analyst - masoud.aghamohamadian-sharbaf@univ-amu.fr

Keywords: Data design, Signal/ image processing, Microscopic imaging, Mathematical curiosity

His profile: https://centuri-livingsystems.org/m-sharbaf/

Our process

You have an engineering question or an issue that you canno’t solve with your platform: meet us at the open desk or contact us directly.

One of our engineers will be assigned to you and will guide you through our request management process.

We strongly encourage you to contact us as early as possible during the project. We can advise you on the acquisition of experimental data in order to facilitate future analyses.

We can also help you recruit and supervise an engineer working in your team and dedicated entirely to your projects.

Please contact us for more information.

Next event

Coming soon

Info feed

CENTURI Engineering seminar: EPySeg a new deep learning method for epithelial cell segmentation.

24 December 2020

Benoit Aigouy presented his new EPySeg, a method to segment epithelial cells using deep learning.

Multi-Engineering courses: BioImage Databases

9 October 2020

Guillaume Gay taught a course on BioImage Databases.

A bioinformatics slack chanel as been created.

26 June 2020

This channel encourage interaction between our bioinformatics community on the Luminy campus/Aix-Marseille.

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Join our Slack channels

You can now join our CENTURI multi-engineering platform Slack account to discuss with us and with the CENTURI community :

Slack CENTURI multi-engineering platform

Contact us

Access map

CENTURI Multi-engineering platform

Bâtiment TPR2, RdC
Campus de LUMINY
163 Avenue de Luminy
13288 Marseille Cedex 9