Thomas Vannier (CENTURI Multi-engineering platform)
Bioinformatics Data Analyst
September 2019 - Present | Research Engineer in Bioinformatics - Data analyst , CENTURI Multi-engineering Platform, Aix-Marseille University (Marseille, France)
2017 - 2019 | Post-doctoral fellow in Environmental Genomics, CNRS, Mediterranean Institute of Oceanography (Marseille, France)
2014 - 2017 | Ph.D. in Bioinformatics, CEA/Genoscope, Paris-Saclay University (Evry, France)
2012 - 2014 | Research Engineer in genomic data analysis, Paris-Diderot University, Research Institute of the Foundations of Computer Science (Paris, France)
2010 - 2012 | MSc degree in Bioinformatics, Paris-Diderot University (Paris, France)
2007 - 2010 | BSc degree in Life and Health Sciences, Nice-Sophia Antipolis University (Nice, France)
My master’s degree in this interdisciplinarity field that is bioinformatics gives me the know-how to analyze various data like genomes, transcriptomes, proteomes, macromolecular structures or interaction networks. I completed a Ph.D. in bioinformatics during which I studied the impact of ocean currents and physicochemical parameters on the organization of the genomic content of green algae and planktonic communities on a global scale through comparative analysis of Tara Oceans metagenomic/transcriptomic data. This transdisciplinary project has required collaboration with international laboratories and the use of High-Performance Computing Cluster for the analysis of these large scale biological data. Then, I joined the Mediterranean Institute of Oceanography in Marseille as part of a two-year postdoctoral fellowship. My research project consisted in studying bacterial bioluminescence in the global ocean. To this end, I worked on the biogeographic and evolutionary analysis of bacterial luciferase by integrating metagenomic data from different large-scale marine environment sequencing projects.
As a research engineers in bioinformatics within CENTURI multi-engineering platform, I am in charge to perform on-demand -omics data analysis projects in support of research programs conducted by CENTURI teams. I also advise researchers on data analysis and extraction. Moreover, I organize and conduct courses on bioinformatics and data analysis and assist in technology transfer between the teams of the CENTURI project.
Keywords : Bioinformatics; Next Generation Sequencing; FAIR; -Omics analyses: Transcriptomics (Single-Cell RNA-seq, BulkRNAseq), Metagenomics, Metatranscriptomics, Environmental Genomics, Epigenomics (ATACseq), Proteomics; Phylogenetics; De novo assembly; Biostatistics; Functional and structural annotation, Genome comparison; Clustering.