CENTURI multi-engineering platform
Activities
Updated 24/07/2023
Publications
2023
- Fanny Hidalgo-Villeda, Matthieu Million, Catherine Defoort, Thomas Vannier, Ljubica Svilar, Margaux Lagier, Camille Wagner, Cynthia Arroyo-Portilla, Lionel Chasson, Cécilia Luciani, Vincent Bossi, Jean-Pierre Gorvel, Hugues Lelouard, Julie Tomas. Prolonged dysbiosis and altered immunity under nutritional intervention in a physiological mouse model of severe acute malnutrition. iScience 2023 jun 16. doi: https://doi.org/10.1016/j.isci.2023.106910
- Thomas Legier, Diane Rattier, Jack Llewellyn, Thomas Vannier, Benoit Sorre, Flavio Maina & Rosanna Dono. Epithelial disruption drives mesendoderm differentiation in human pluripotent stem cells by enabling TGF-β protein sensing. Nature Communications 2023 Jan 21. doi: https://doi.org/10.1038/s41467-023-35965-8.
- Dina Aggad, Nicolas Brouilly, Shizue Omi, Clara Luise Essmann, Benoit Dehapiot, Cathy Savage-Dunn, Fabrice Richard, Chantal Cazevieille, Kristin A Politi, David H Hall, Remy Pujol, Nathalie Pujol. Meisosomes, folded membrane microdomains between the apical extracellular matrix and epidermis. eLife 2023 Mar 13. doi: https://doi.org/10.7554/eLife.75906
2022
- Morgane Jaeger, Amandine Anastasio, Sophie Brustlein, Renaud Vincentelli, Fabien Durbesson, Rémy Char, Maud Boussand, Mathias Lechelon, Rafael J. Argüello, Didier Marguet, Hai-Tao He, Rémi Lasserre. Light-inducible T cell engagers trigger, tune and shape the activation of primary T cells. bioRxiv 2022 Apr 15. doi: https://doi.org/10.1101/2022.04.15.488452.
- Najoua Biba, Hélène Becq, Emilie Pallesi-Pocachard, Stefania Sarno, Samuel Granjeaud, Aurélie Montheil, Marie Kurz, Laurent Villard, Mathieu Milh, Pierre-Pascal Lenck Santini, Laurent Aniksztejn. Time-limited alterations in cortical activity of a knock-in mice model of KCNQ2-related developmental and epileptic encephalopathy. The Journal of Physiology 2022 Apr 7. doi: https://doi.org/10.1113/JP282536
- F. Hidalgo-Villeda, M. Million, C. Defoort, F. Sicard, M. Lagier, C. Wagner, C. Arroyo-Portilla, L. Chasson, Thomas Vannier, J.-P. Gorvel, H. Lelouard, J. Tomas. Un nouveau modèle murin de la malnutrition aiguë sévère infantile révèle un défaut de l’immunité de la plaque de Peyer ainsi qu’une altération du microbiote et du profil métabolomique. Nutrition Clinique et Métabolique 2022 Feb. doi: DOI: 10.1016/j.nupar.2021.12.012
- Micaela Boiero Sanders, Christopher P. Toret, Audrey Guillotin, Adrien Antkowiak, Thomas Vannier, Robert C. Robinson and Alphée Michelot. Specialization of actin isoforms derived from the loss of key interactions with regulatory factors. EMBO J 2022 Feb 18;:e107982. doi: 10.15252/embj.2021107982
2021
- Aoun L, Nègre P, Gonsales C, Seveau de Noray V, Brustlein S, Biarnes-Pelicot M, Valignat MP, Theodoly O. Leukocyte transmigration and longitudinal forward-thrusting force in a microfluidic Transwell device. Biophys J. 2021 Jun 1;120(11):2205-2221. doi: 10.1016/j.bpj.2021.03.037. Epub 2021 Apr 8.
- Robert P, Biarnes-Pelicot M, Garcia-Seyda N, Hatoum P, Touchard D, Brustlein S, Nicolas P, Malissen B, Valignat MP, Theodoly O. Functional Mapping of Adhesiveness on Live Cells Reveals How Guidance Phenotypes Can Emerge From Complex Spatiotemporal Integrin Regulation. Front Bioeng Biotechnol. 2021 Apr 7;9:625366. doi: 10.3389/fbioe.2021.625366.
2020
- Mailfert S, Wojtowicz K, Brustlein S, Blaszczak E, Bertaux N, Łukaszewicz M, Marguet D, Trombik T. Spot Variation Fluorescence Correlation Spectroscopy for Analysis of Molecular Diffusion at the Plasma Membrane of Living Cells. J Vis Exp. 2020 Nov 12;(165). doi: 10.3791/61823.
Training and formation
2023
- CENTURI Summer School 2023 | From data to biology and back
- June 19-30, 2023 : 10h - Hands-on workshop - Track machine learning and data analysis. (S. Sarno & T. Vannier).
- June 19-30, 2023 : 33h - Scientific project - "How does a biological organism reacts to different temperature and light conditions?" (T. Boudier & M. Lechelon)
- CENTURI | Introduction to biological data analysis courses :
- March 28, 2023 : 2h - Supervised learning algorithms for classification (S. Sarno).
- February 28, 2023 - 3h - FAIR data principles and reproductibility of your analyses (T. Vannier)
2022
- CENTURI | Tools and data presentation :
- March 2, 2022 : 1h - "Shiva" : A Single Cell analysis software (A. Muhammad & T. Vannier).
- February 3, 2022 - 1h - 3D ImageJ Suite : Presentation of 3D Analysis (T. Boudier).
- CENTURI Engineering | Introduction to biological data analysis 2022
- April 12, 2022 : 5h - Introduction to Python and its environment (part 1).
- April 19, 2022 : 5h - Introduction to Python and its environment (part 2).
- April 19, 2022 : 5h - Python advanced introduction.
- April 26, 2022 : 5h - Overview of basic data analysis and visualization.
- May 10, 2022 : 5h - Supervised machine learning.
- May 17, 2022 : 5h - Unsupervised machine learning.
- May 24, 2022 : 5h - Bring your own problem 1.
- May 31, 2022 : 5h - Image manipulation with Python.
- June 7, 2022 : 5h - Deep learning for image analysis.
- June 14, 2022 : 5h - Machine learning in Bioinformatics.
- June 21, 2022 : 5h - Bring your own problem 2.
2021
- CENTURI | Summer school 2021 :
- June 21, 2021 : 1h30 - Transversal sessions - Open science (G.Gay)
- June 15-24, 2021: 32h - Tutor for the neuroscience project#1 : "Functional organization of neural networks" (S.Sarno)
- June 15-24, 2021: 32h - Tutor for the developmental biology project : "Mechanics of tissue elongation" (B.Dehapiot)
- CENTURI | Focus on imaging 2021 :
- June 10, 2021 : 1h - Image annotation and bioimage database (G.Gay)
- June 21, 2021 : 6h - Introduction to image processing using ImageJ (B.Dehapiot)
- June 22, 2021 : 6h - Python for image-data analysis (G.Gay & S.Sarno)
2020
- CENTURI | Engineer's Courses :
Passing on our knowledge to the CENTURI community
- July 06 and 20, 2020 : 2 x 2h - Git, GitHub & GitLab (G.Gay)
- CENTURI | Focus on imaging 2020 :
- March 02, 2020 : 2 x 3h - Confocal Microscopy (S.Brustlein)
- March 05, 2020 : 2h - Super Resolution and Single Molecule (B.Dehapiot)
- March 06, 2020 : 2 x 2h30 - Workshop ImageJ (B.Dehapiot)
- Aix Marseille Université | Master Bioinfo, Computational and Mathematical Biology (CMB) :
- October 09 and 16, 2020 : 2 x 3h - Biological image databases (G.Gay)
2019
- CENTURI | Summer school 2019 :
- June 03-12, 2019 : 6 x 3h30 - Hands on data project’s tutor (S.Brustlein)
- CENTURI | Focus on imaging 2019 :
- April 02, 2019 : 2 x 3h - Confocal Microscopy (S.Brustlein)
Public communication
2023
- Centrale Marseille :
- February 6, 2023 : Multi-Engineering Platform presentation (T.Vannier)
2022
- CENTURI | CENTURI Scientific Day :
- November 24, 2022 : Automate your image analysis workflow with TAPAS. (T.Boudier)
- Aix Marseille Université | Master Bioinfo, Dév. Logiciel et Analyse des Données (DLAD) :
- November 28, 2022 : Multi-Engineering Platform presentation (T.Vannier)
- Centrale Marseille :
- February 14, 2022 : Multi-Engineering Platform presentation (T.Vannier)
- Tools and data presentation | session 1
- February 3, 2022 : 3D Analysis with the 3D ImageJ Suite (T.Boudier)
2021
- BioImage Informatics 2021 (virtual conference)
- December 1, 2021 : TAPAS : a framework for data organisation and automated analysis (T.Boudier)
- Aix Marseille Université | Master Bioinfo, Dév. Logiciel et Analyse des Données (DLAD) :
- November 29, 2021 : Multi-Engineering Platform presentation (T.Vannier)
- CENTURI | Tech Transfert Day :
- September 16, 2021 : The CENTURI Tech Transfer took place on the Luminy campus. It gathered 40 participants at the Hexagon auditorium. (slideshow)
- JOBIM 2021 local event :
- July 06-09, 2021 : "The Open Days in Biology, Computer Science and Mathematics" was organized locally in association with the group Networks and Systems Biology for Diseases (MMG) and CENTURI Multi-Engineering Platform (T.Vannier)
- CENTURI | Scientific Day :
- July 02, 2021 : Multi-Engineering Platform presentation (slideshow)
- OMERO community meeting :
- June 08, 2021 : Cataloger, a tool to automate image annotation and import (G.Gay)
- ProDev Day - Provence developer network :
- February 18, 2021 : Presentation of the Jupyter Project (G.Gay)
- Centrale Marseille :
- February 08, 2021 : Multi-Engineering Platform presentation (T.Vannier)
2020
- CENTURI | Engineer’s breakfast / open desk :
Promoting interaction between our engineers and the CENTURI community.
- July 02, 2020 : Open desk #4 at the TPR1, G2.10 (2nd floor, entrance G)
- March 10, 2020 : Open desk #3 at the CIML’s cafeteria
- Aix Marseille Université | Master Bioinfo, Dév. Logiciel et Analyse des Données (DLAD) :
- October 12, 2020 : Multi-Engineering Platform presentation (T.Vannier)
- Centrale Marseille :
- February 03, 2020 : Multi-Engineering Platform presentation (T.Vannier)
- CENTURI | Scientific advisory board (SAB) :
- January 30, 2020 : Multi-Engineering Platform presentation (slideshow)
2019
- CENTURI | Engineer’s breakfast / open desk :
Promoting interaction between our engineers and the CENTURI community.
- December 10, 2019 : Open desk #2 at the INMED’s cafeteria
- October 18, 2019 : Open desk #1 at the TPR1, G2.10 (2nd floor, entrance G)
- CENTURI | Scientific day - Imaging :
- November 22, 2019 : Multi-Engineering Platform presentation (poster)
- Centrale Marseille :
- February 04, 2019 : Multi-Engineering Platform presentation (slideshow)
2018
- CENTURI | Tech-transfer day :
- November 09, 2018 : Tech-transfer mission and Multi-Engineering Platform presentation (slideshow)
Miscellaneous
2021
- Platform Wiki :
- We are using a wiki to share tools, tutorials and open projects we are working on (software & hardware). You are welcome to participate by creating an account using the following email domains: univ-amu.fr, etu.univ-amu.fr, cnrs.fr, inserm.fr, fresnel.fr (G.Gay & M.Lechelon)
2020
- Platform Slack channel :
- We are using Slack to connect and interact with the CENTURI community (Q.Tseng)
- Project management software - Clicket :
- Clicket is a custom web service that allows us to keep track of our interactions with the CENTURI community (G.Gay)
- CENTURI | 2nd Tech-transfer call :
- November 10, 2020 : Tech-transfer projects evaluation
2018
- CENTURI | 1st Tech-transfer call :
- November 30, 2018 : Tech-transfer projects evaluation