CENTURI multi-engineering platform
Activities

Updated 16/07/2021

Coming events

- CENTURI | Engineer's breakfast / open desk :

The next open desk will take place the 27 of September between 9am to 12am in room 1.04 of the TPR2 (new AMU building)

- CENTURI | Engineer's Courses :

The date and format of the courses will be established soon.

  • Introduction on Docker : A tools to improve the reproductibility of your analyses (T. Vannier)
  • Design with FreeCAD (M.Lechelon)
  • How to 3D print your own pieces (M.Lechelon)
  • Introduction to versioning with Git (G.Gay)
  • Collaborative development with GitHub and GitLab (G.Gay)
  • Introduction to scientific computing with Python (G.Gay)

Training and formation

2021

- CENTURI | Summer school 2021 :

  • June 21, 2021 : 1h30 - Transversal sessions - Open science (G.Gay)
  • June 15-24, 2021: 32h - Tutor for the neuroscience project#1 : "Functional organization of neural networks" (S.Sarno)
  • June 15-24, 2021: 32h - Tutor for the developmental biology project : "Mechanics of tissue elongation" (B.Dehapiot)

- CENTURI | Focus on imaging 2021 :

  • June 10, 2021 : 1h - Image annotation and bioimage database (G.Gay)
  • June 21, 2021 : 6h - Introduction to image processing using ImageJ (B.Dehapiot)
  • June 22, 2021 : 6h - Python for image-data analysis (G.Gay & S.Sarno)

2020

- CENTURI | Engineer's Courses :

Passing on our knowledge to the CENTURI community

  • July 06 and 20, 2020 : 2 x 2h - Git, GitHub & GitLab (G.Gay)

- CENTURI | Focus on imaging 2020 :

  • March 02, 2020 : 2 x 3h - Confocal Microscopy (S.Brustlein)
  • March 05, 2020 : 2h - Super Resolution and Single Molecule (B.Dehapiot)
  • March 06, 2020 : 2 x 2h30 - Workshop ImageJ (B.Dehapiot)

- Aix Marseille Université | Master Bioinfo, Computational and Mathematical Biology (CMB) :

  • October 09 and 16, 2020 : 2 x 3h - Biological image databases (G.Gay)

2019

- CENTURI | Summer school 2019 :

  • June 03-12, 2019 : 6 x 3h30 - Hands on data project’s tutor (S.Brustlein)

- CENTURI | Focus on imaging 2019 :

  • April 02, 2019 : 2 x 3h - Confocal Microscopy (S.Brustlein)

Public communication

2021

- JOBIM 2021 local event :

  • July 06-09, 2021 : "The Open Days in Biology, Computer Science and Mathematics" was organized locally in association with the group Networks and Systems Biology for Diseases (MMG) and CENTURI Multi-Engineering Platform (T.Vannier)

- CENTURI | Scientific Day :

  • July 02, 2021 : Multi-Engineering Platform presentation (slideshow)

- OMERO community meeting :

  • June 08, 2021 : Cataloger, a tool to automate image annotation and import (G.Gay)

- ProDev Day - Provence developer network :

  • February 18, 2021 : Presentation of the Jupyter Project (G.Gay)

- Centrale Marseille :

  • February 08, 2021 : Multi-Engineering Platform presentation (slideshow)

2020

- CENTURI | Engineer’s breakfast / open desk :

Promoting interaction between our engineers and the CENTURI community.

  • July 02, 2020 : Open desk #4 at the TPR1, G2.10 (2nd floor, entrance G)
  • March 10, 2020 : Open desk #3 at the CIML’s cafeteria

- Aix Marseille Université | Master Bioinfo, Dév. Logiciel et Analyse des Données (DLAD) :

  • October 12, 2020 : Multi-Engineering Platform presentation (slideshow)

- Centrale Marseille :

  • February 03, 2020 : Multi-Engineering Platform presentation (slideshow)

- CENTURI | Scientific advisory board (SAB) :

  • January 30, 2020 : Multi-Engineering Platform presentation (slideshow)

2019

- CENTURI | Engineer’s breakfast / open desk :

Promoting interaction between our engineers and the CENTURI community.

  • December 10, 2019 : Open desk #2 at the INMED’s cafeteria
  • October 18, 2019 : Open desk #1 at the TPR1, G2.10 (2nd floor, entrance G)

- CENTURI | Scientific day - Imaging :

  • November 22, 2019 : Multi-Engineering Platform presentation (poster)

- Centrale Marseille :

  • February 04, 2019 : Multi-Engineering Platform presentation (slideshow)

2018

- CENTURI | Tech-transfer day :

  • November 09, 2018 : Tech-transfer mission and Multi-Engineering Platform presentation (slideshow)

Miscellaneous

2021

- Platform Wiki :

  • We are using a wiki to share tools, tutorials and open projects we are working on (software & hardware). You are welcome to participate by creating an account using the following email domains: univ-amu.fr, etu.univ-amu.fr, cnrs.fr, inserm.fr, fresnel.fr (G.Gay & M.Lechelon)

Link to the Multi-Engineering Platform Wiki

2020

- Platform Slack channel :

  • We are using Slack to connect and interact with the CENTURI community (Q.Tseng)

Link to the Multi-Engineering Platform Slack channel

- Project management software - Clicket :

  • Clicket is a custom web service that allows us to keep track of our interactions with the CENTURI community (G.Gay)

- CENTURI | 2nd Tech-transfer call :

  • November 10, 2020 : Tech-transfer projects evaluation

2018

- CENTURI | 1st Tech-transfer call :

  • November 30, 2018 : Tech-transfer projects evaluation

Publications

2021

Aoun L, Nègre P, Gonsales C, Seveau de Noray V, Brustlein S, Biarnes-Pelicot M, Valignat MP, Theodoly O. Leukocyte transmigration and longitudinal forward-thrusting force in a microfluidic Transwell device. Biophys J. 2021 Jun 1;120(11):2205-2221. doi: 10.1016/j.bpj.2021.03.037. Epub 2021 Apr 8.

Robert P, Biarnes-Pelicot M, Garcia-Seyda N, Hatoum P, Touchard D, Brustlein S, Nicolas P, Malissen B, Valignat MP, Theodoly O. Functional Mapping of Adhesiveness on Live Cells Reveals How Guidance Phenotypes Can Emerge From Complex Spatiotemporal Integrin Regulation. Front Bioeng Biotechnol. 2021 Apr 7;9:625366. doi: 10.3389/fbioe.2021.625366.

2020

Mailfert S, Wojtowicz K, Brustlein S, Blaszczak E, Bertaux N, Łukaszewicz M, Marguet D, Trombik T. Spot Variation Fluorescence Correlation Spectroscopy for Analysis of Molecular Diffusion at the Plasma Membrane of Living Cells. J Vis Exp. 2020 Nov 12;(165). doi: 10.3791/61823.