Bioinformatics Major
Master 2 courses
1st Semester
Shared courses
Organisation: Lectures (10h), TD (10h), TP (10h)
Lecturers: Bianca Habermann, Albert Michelot, Elisabeth Rémy
Evaluation: project and continuous monitoring
Following [PRO2] seminars, the students will attend all the Centuri seminars of this semester. For two of them, they will be asked to broaden their knowledges on the subject and present an oral and written synthese.
Organisation: Lectures (10h), TD (8h), TP (12h)
Lecturers: Anais Baudot
Evaluation: final exam, projects and oral presentation
This module will introduce the bases of biological network analysis, from graph theory and algorithms to dynamical modeling. A large part of the module is dedicated to hands-on tutorials, which introduces R and Python packages, as well as softwares widely used in Network Biology, such as Cytoscape and GinSim.
Organisation: Lectures (6h), TD (6h), TD (6h)
Evaluation: project and continuous monitoring
Students are asked to pick 2 of the 3 following optional courses:
- Developmental Biology
- Immunology
- Neurobiology
Organisation: Project during the semester
Lecturers: Florence Hubert, Laurence Röder
Evaluation: project
At the end of the courses [PRO1], and [BIO1], students will choose a scientific article at the interface of several disciplines on which they will work in groups. They will have to present in a memory and an oral presentation, to explain the biological context and the related basic concepts, to explain the methods used to interpret the biological data, to synthesize the results obtained in the article.
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Organisation: Lectures (6h), TD (6h), TP (6h)
Lecturers: Pierre Pudlo
Evaluation: continuous exam and projects
This course is an introduction to inferential statistics. It will be illustrated with biogical examples. The course will be composed by three parts
- Multiple tests
- Classification
- Time series analysis
Bioinformatics courses
Organisation: Lectures (6h), TD (6h), TD (6h)
Evaluation: project and continuous monitoring
Students are asked to pick the 3rd options of the following optional courses (see 1st semester):
- Developmental Biology
- Immunology
- Neurobiology
Organisation: Lectures (6h), TD (6h), TP (6h)
Lecturers: Jacques van Helden
Evaluation: continuous exam
After a general introduction on biological databases (contribution to scientific discovery, types of databases and data available, access to data), this teaching is divided into three parts:
- Genomic databases and databases of specific model organisms
- Data organization in the humanities,
- Management of microscopy data in biology
Organisation: Lectures (6h), TD (6h), TP (6h)
Lecturers: Michael Kopp
Evaluation: final exam and projects
This course will propose some illustrations of the concepts and results of mathematical modelling to biological systems, with a specific focus on the domains of interest to CenTuri (immunology, developmental biology, neurology). Practicals will consist in a personal project that may consist in extending one of the examples seen in the courses.