Scientific Publication - Centuri Living Systems

CENTURI Scientific Publications

2024

Mechanical regulation of substrate adhesion and de-adhesion drives a cell-contractile wave during Drosophila tissue morphogenesis.
Collinet C, Bailles A, Dehapiot B, Lecuit T.
Dev Cell. 2024 Jan 8;59(1):156-172.e7. doi: 10.1016/j.devcel.2023.11.022.
Comparative Study of Transformer Robustness for Multiple Particle Tracking Without Clutter
P. Mishra and P. Roudot,
2024 32nd European Signal Processing Conference (EUSIPCO), Lyon, France, 2024, pp. 571-575, doi: 10.23919/EUSIPCO63174.2024.10715042.
Crb3 is required to organize the apical domain of multiciliated cells
Céline Burcklé, Juliette Raitière, Grégoire Michaux, Laurent Kodjabachian, André Le Bivic
J Cell Sci 2024 Mar 1;137(5):jcs261046.
doi: 10.1242/jcs.261046. Epub 2023 Nov 24.
The zonula adherens matura redefines the apical junction of intestinal epithelia
Pierre Mangeol, Dominique Massey-Harroche, Michael Sebbagh, Fabrice Richard, André Le Bivic, Pierre-François Lenne
Proc Natl Acad Sci U S A 2024 Feb 27;121(9):e2316722121.
doi: 10.1073/pnas.2316722121. Epub 2024 Feb 20.
Zonula adherens matura: A new intestinal cell junction
Pierre Mangeol, Dominique Massey-Harroche, Michael Sebbagh, Fabrice Richard, Pierre-François Lenne, André Le Bivic
Med Sci (Paris) 2024 Dec;40(12):985-988.
doi: 10.1051/medsci/2024170. Epub 2024 Dec 20.
The placozoan Trichoplax
Marvin Leria, Magali Requin, André Le Bivic, Andrea Pasini
Nat Methods, 2024 Apr;21(4):543-545
doi: 10.1038/s41592-024-02228-3.
Alphavirus nsP3 organizes into tubular scaffolds essential for infection and the cytoplasmic granule architecture
Kril, V., Hons, M. co-1st, Amadori, C. Zimberger C, Couture L, Bouery Y, Burlaud-Gaillard J, Karpov A, Ptchelkine D, Thienel AL, Kümmerer BM, Desfosses A, Jones R, Roingeard P, Meertens L, Amara, A*. Reguera, J*.
Nat Commun 15, 8106 (2024)
SpecificRequirement of the p84/p110γ Complex of PI3Kγ for Antibody-Activated, Inducible Cross-Presentation in Murine Type 2 DCs.
Koumantou D, Adiko AC, Bourdely P, Nugue M, Boedec E, El-Benna J, Monteiro R,Saveanu C, Laffargue M, Wymann MP, Dalod M, Guermonprez P, Saveanu L.
Adv Sci (Weinh). 2024 Nov;11(44):e2401179. doi: 10.1002/advs.202401179. Epub 2024 Oct 9. PMID: 39382167; PMCID: PMC11600261.
SARS- CoV2 infection in whole lung primarily targets macrophages that display subset- specific responses.
Vu Manh TP, Gouin C, De Wolf J, Jouneau L, Pascale F, Bevilacqua C, Ar Gouilh M, Da Costa B, Chevalier C, Glorion M, Hannouche L, Urien C, Estephan J, Magnan A, Le GuenM, Marquant Q, Descamps D, Dalod M, Schwartz-Cornil I, Sage E. Cell Mol Life Sci. 2024 Aug 15;81(1):351. doi: 10.1007/s00018-024-05322-z. PMID: 39147987; PMCID: PMC11335275
The role of plasmacytoid dendritic cells (pDCs) in immunity during viral infections and beyond.
Ngo C, Garrec C, Tomasello E, Dalod M. Cell Mol Immunol. 2024 Sep;21(9):1008-1035. doi: 10.1038/s41423-024-01167-5. Epub 2024 May 22. PMID: 38777879; PMCID: PMC11364676
Dendritic cell-targeted therapy expands CD8 T cell responses to bona-fide neoantigens in lung tumors.
López L, Morosi LG, La Terza F, Bourdely P, Rospo G, Amadio R, Piperno GM, Russo V, Volponi C, Vodret S, Joshi S, Giannese F, Lazarevic D, Germano G, Stoitzner P, Bardelli A, Dalod M, Pace L, Caronni N, Guermonprez P, Benvenuti F. Nat Commun. 2024 Mar 13;15(1):2280. doi: 10.1038/s41467-024-46685-y. PMID: 38480738; PMCID: PMC10937682
Distinct ontogenetic lineages dictate cDC2 heterogeneity.
Minutti CM, Piot C, Pereira da Costa M, Chakravarty P, Rogers N, Huerga Encabo H, Cardoso A, Loong J, Bessou G, Mionnet C, Langhorne J, Bonnet D, Dalod M, Tomasello E, Reis E Sousa C. Nat Immunol. 2024 Mar;25(3):448-461. doi: 10.1038/s41590-024-01745-9. Epub 2024 Feb 13. PMID: 38351322; PMCID: PMC10907303
Nonlinear mechanosensation in fiber networks
Estelle Berthier, Haiqian Yang, Ming Guo, Pierre Ronceray, and Chase P. Broedersz
How Do Particles with Complex Interactions Self-Assemble?
Lara Koehler, Pierre Ronceray, and Martin Lenz
Inferring geometrical dynamics of cell nucleus translocation
Sirine Amiri, Yirui Zhang, Andonis Gerardos, Cécile Sykes, and Pierre Ronceray
Survival probability and position distribution of a run and tumble particle in potential with an absorbing boundary
Sujit Kumar Nath and Sanjib Sabhapandit
Partition sum of thermal, underconstrained systems
Cheng-Tai Lee and Matthias Merkel, PRE, https://doi.org/10.1103/PhysRevE.110.064147
Generic Elasticity of Thermal, Underconstrained Systems
Cheng-Tai Lee and Matthias Merkel,
PRL https://doi.org/10.1103/PhysRevLett.133.268201
Assessment of coupled bilayer–cytoskeleton modelling strategy for red blood cell dynamics in flow
V. Puthumana, P.G. Chen, M. Leonetti, R. Lasserre and M. Jaeger
J. Fluid Mech. (2024), vol. 979, A44, doi:10.1017/jfm.2023.1092
Substrate stiffness alters layer architecture and biophysics of human induced pluripotent stem cells to modulate their differentiation potential
Jack Llewellyn, Anne Charrier, Rossana Cuciniello, Emmanuèle Helfer, Rosanna Dono
iScience 27:110557 (2024)10.1016/j.isci.2024.110557
Crb3 is required to organize the apical domain of multiciliated cells.
Burcklé*, C., Raitière, J., G. Michaux, Kodjabachian, L^&. and Le Bivic^&, A. 2024. ^&co-senior authors. *corresponding author. J. Cell Sci. 137(5):jcs261046
Characterization of a vertebrate Vangl2 translational variant required for PCP.
Walton, A^$., Thomé, V^$., Revinski, D., Puvirajesinghe, T., Audebert, S., Camoin, L., Marchetto, S., Bailly, E.*., Kodjabachian, L*., and Borg, J-P*. 2024. ^$contributed equally, *corresponding authors. J. Biol. Chem. 300(4):106792. PMID: 38403249
The placozoan Trichoplax
Marvin Leria, Magali Requin, André Le Bivic & Andrea Pasini
Lymphotoxin limits Foxp3+ regulatory T cell development from Foxp3lo precursors via IL-4 signaling
Alexia Borelli, Jérémy C. Santamaria, Cloé Zamit, Cécile Apert, Jessica Chevallier, Philippe Pierre, Rafael J. Argüello, Lionel Spinelli & Magali Irla
RANKL treatment restores thymic function and improves T cell–mediated immune responses in aged mice
Jérémy C. Santamaria, Jessica Chevallier, Léa Dutour, Amandine Picart, Camille Kergaravat, Agata Cieslak,, Mourad Amrane, Renaud Vincentelli, Denis Puthier, Emmanuel Clave, Arnauld Sergé, Martine Cohen- Solal, Antoine Toubert, Magali Irla
Transfer of polarity information via diffusion of Wnt ligands in C. elegans embryos
Recouvreux P., Pai P., Dunsing V., Torro R., Ludanyi M., Mélénec P., Boughzala M., Bertrand V. and Lenne P.F. (2024).
Current Biology 34, 1853-65.
Left/right asymmetrically expressed ephrin and Flamingo proteins regulate lateralized axon growth in C. elegans
Buyannemekh K., Villoutreix P. and Bertrand V. (2025)
Developmental Biology 517, 117-125.
E-cadherin-dependent phosphorylation of EGFR governs a homeostatic feedback loop controlling intercellular junction viscosity and collective migration modes
C. Fu(1), F. Dilasser(1), S.-Z. Lin(1), M. Karnat(1), A. Arora, H. Rajendiran, H. T. Ong, N. M. Hoon Brenda, S. W. Phow, T. Hirashima, M. P. Sheetz, J.-F. Rupprecht*, S. Tlili*, V. Viasnoff*
PNAS (2024) [bioRxiv version]
Membrane tilt drives phase separation of adhesion receptors
S.-Z. Lin, R. Changede, A. J. Farrugia, A. D. Bershadsky, M. P. Sheetz, J. Prost, J.-F. Rupprecht
Physical Review Letters (2024) [arXiv version]
Curvature-induced clustering of cell adhesion proteins
S.-Z. Lin, J. Prost, J.-F. Rupprecht
Physical Review E (2024), Editor Suggestion [arXiv version]
Syngap1 promotes cognitive function through regulation of cortical sensorimotor dynamics.
Vaissiere T, Michaelson SD, Creson T, Goins J, Fürth D, Balazsfi D, Rojas C, Golovin R, Meletis K, Miller CA, O'Connor D, Fontolan L, Rumbaugh G
Nat Commun. 2025 Jan 18;16(1):812. doi: 10.1038/s41467-025-56125-0. PMID: 39827187; PMCID: PMC11743135
Single-cell morphometrics reveals T-box gene-dependent patterns of epithelial tension in the Second Heart field
Clara Guijarro+, Solène Song+, Benoit Aigouy, Raphael Clement, Paul Villoutreix*, Robert G. Kelly* – Nature Communications, 2024
Spatial reconstruction of single-cell enhancer activity in a multicellular organism
Baptiste Alberti, Séverine Vincent, Isabelle Stévant, Damien Lajoignie, Hélène Tarayre, Paul Villoutreix, Yad Ghalvi-Helm – bioRxiv 2024
Left/right asymmetrically expressed ephrin and Flamingo proteins regulate lateralized axon growth in C. elegans
Khulganaa Buyannemekh, Paul Villoutreix, Vincent Bertrand – Developmental Biology, 2024
Hierarchical novel class discovery for single-cell transcriptomic profiles
Malek Senoussi, Thierry Artières, Paul Villoutreix – arXiv, 2024
Assessing the relative contributions of mosaic and regulatory developmental modes from single-cell trajectories
Solène Song, Paul Villoutreix – bioRxiv, 2024
MOTL: enhancing multi-omics matrix factorization with transfer learning
David Hirst, Morgane Térézol, Laura Cantini, Paul Villoutreix, Matthieu Vignes, Anaïs Baudot – bioRxiv, 2024
Limited column formation in the embryonic growth plate implies divergent growth mechanisms during pre- and postnatal bone development
Sarah Rubin, Ankit Agrawal, Anne Seewald, Meng-Jia Lian, Livia Gottdenker, Paul Villoutreix, Adrian Baule, Tomer Stern, Elazar Zelzer – eLife, 2024
Partial label learning for automated classification of single cell transcriptomic profiles
Malek Senoussi, Thierry Artières*, Paul Villoutreix* – PLoS Computational Biology, 2024
A defining member of the new cysteine-cradle family is an aECM protein signalling skin damage in C. elegans.
Sonntag T, Omi S, Andreeva A, Eichelbrenner J, Chisholm AD, Ward JD, Pujol N.
BioRxiv [Preprint]. 2024 Nov 5:2024.04.11.589058. doi: 10.1101/2024.04.11.589058.PMID: 39574764
C. elegans epicuticlins define specific compartments in the apical extracellular matrix and function in wound repair.
Pooranachithra M, Jyo EM, Brouilly N, Pujol N, Ernst AM, Chisholm AD.
Development. 2024 Nov 1;151(21):dev204330. doi: 10.1242/dev.204330. Epub 2024 Oct 23.PMID: 39373389
The Caenorhabditis elegans cuticle and precuticle: a model for studying dynamic apical extracellular matrices in vivo.
Sundaram MV, Pujol N.
Genetics. 2024 Aug 7;227(4):iyae072. doi: 10.1093/genetics/iyae072.PMID: 38995735 Review.
Membrane tilt drives phase separation of adhesion receptors. S.-Z. Lin, R. Changede, A. J. Farrugia, A. D. Bershadsky, M. P. Sheetz, J. Prost, J.-F. Rupprecht, Physical Review Letters, https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.132.188402
PatternJ: an ImageJ toolset for the automated and quantitative analysis of regular spatial patterns found in sarcomeres, axons, somites, and more. Mélina Baheux Blin, Vincent Loreau, Frank Schnorrer, Pierre Mangeol. BioRxiv 2024 Jan 20. doi: https://doi.org/10.1101/2024.01.17.576053
Dissolved organic matter offsets the detrimental effects of climate change in the nitrogen-fixing cyanobacterium Crocosphaera. Alba Filella, Jacqueline Umbricht, Angelina Klett, Angela Vogts, Thomas Vannier, Olivier Grosso, Maren Voss, Lasse Riemann, Mar Benavides. Limnology and Oceanography Letters 2024 Mar 5. doi: https://doi.org/10.1002/lol2.10380.

2023

u-track3D: Measuring, navigating, and validating dense particle trajectories in three dimensions. Roudot et al.,. Cell Reports Methods, vol. 3, no. 12, p. 100655, Dec. 2023, doi: 10.1016/j.crmeth.2023.100655.
A Detector-Independent Quality Score for Cell Segmentation Without Ground Truth in 3D Live Fluorescence Microscopy. Vanaret, V. Dupuis, P.-F. Lenne, F. Richard, S. Tlili, and P. Roudot. IEEE Journal of Selected Topics in Quantum Electronics, vol. 29, no. 4: Biophotonics, pp. 1–12, Jul. 2023, doi: 10.1109/JSTQE.2023.3275108.
Curvature-induced cell rearrangements in biological tissues. Y. Lou, S. Theis, J.-F. Rupprecht, T. Hiraiwa, T. E. Saunders
Physical Review Letters (2023) DOI:10.1103/PhysRevLett.130.108401 https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.130.108401
Structure and Rheology in Vertex Models under Cell-Shape-Dependent Active Stresses. S.-Z. Lin, M. Merkel, J.-F. Rupprecht Physical Review Letters (2023) DOI:10.1103/PhysRevLett.130.058202 https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.130.058202
pH gradients guide ADF/cofilin isoforms in pollen tubes. Dinet C., Michelot A. Journal of Cell Biology (JCB) 222(11), 2023 Oct, DOI:10.1083/jcb.202310012
Reconstitution of actin-based cellular processes: Why encapsulation changes the rules. Kandiyoth FB, Michelot A. Eur J Cell Biol. 2023 Dec;102(4):151368. doi: 10.1016/j.ejcb.2023.151368. Epub 2023 Oct 30. PMID: 37922812.
Protocol to image and analyze hippocampal network dynamics in non-anesthetized mouse pups. Ratsifandrihamanana, M. R., Dard, R. F., Denis, J., Cossart, R. & Picardo, M. A. STAR Protoc. 4, 102760 (2023). DOI: 10.1016/j.xpro.2023.102760
Extrinsic control of the early postnatal CA1 hippocampal circuits. Leprince, E. et al. Neuron 111, 888-902.e8 (2023). doi: https://doi.org/10.1101/2022.06.03.494656
Cortical neuronal assemblies coordinate with EEG microstate dynamics during resting wakefulness. Boyce, R., Dard, R. F. & Cossart, R. Cell Rep. 42, 112053 (2023). DOI: 10.1016/j.celrep.2023.112053
Classification of red cell dynamics with convolutional and recurrent neural networks: a sickle cell disease case study. M. Darrin, A. Samudre, M. Sahun, S. Atwell, C. Badens, A. Charrier, E. Helfer, A. Viallat, V. Cohen-Addad, and S. Giffard-Roisin, Scientific Reports 13, 745 (2023). https://doi.org/10.1038/s41598-023-27718-w
Light-inducible T cell engagers trigger, tune, and shape the activation of primary T cells. Morgane Jaeger, Amandine Anastasio, Léa Chamy, Sophie Brustlein, Renaud Vincentelli, Fabien Durbesson, Julien Gigan, Morgane Thépaut, Rémy Char, Maud Boussand, Mathias Lechelon, Rafael J. Argüello, Didier Marguet, Hai-Tao He, Rémi Lasserre. PNAS 2023 Sep 18. doi: https://doi.org/10.1101/2022.04.15.488452.
Prolonged dysbiosis and altered immunity under nutritional intervention in a physiological mouse model of severe acute malnutrition. Fanny Hidalgo-Villeda, Matthieu Million, Catherine Defoort, Thomas Vannier, Ljubica Svilar, Margaux Lagier, Camille Wagner, Cynthia Arroyo-Portilla, Lionel Chasson, Cécilia Luciani, Vincent Bossi, Jean-Pierre Gorvel, Hugues Lelouard, Julie Tomas. iScience 2023 jun 16. doi: https://doi.org/10.1016/j.isci.2023.106910
Epithelial disruption drives mesendoderm differentiation in human pluripotent stem cells by enabling TGF-β protein sensing. Thomas Legier, Diane Rattier, Jack Llewellyn, Thomas Vannier, Benoit Sorre, Flavio Maina & Rosanna Dono. Nature Communications 2023 Jan 21. doi: https://doi.org/10.1038/s41467-023-35965-8.
Meisosomes, folded membrane microdomains between the apical extracellular matrix and epidermis. Dina Aggad, Nicolas Brouilly, Shizue Omi, Clara Luise Essmann, Benoit Dehapiot, Cathy Savage-Dunn, Fabrice Richard, Chantal Cazevieille, Kristin A Politi, David H Hall, Remy Pujol, Nathalie Pujol. eLife 2023 Mar 13. doi: https://doi.org/10.7554/eLife.75906
Probing mechanical interaction of immune receptors and cytoskeleton by membrane nanotube extraction. Manca, F., Eich, G., N’Dao, O. et al. Sci Rep 13, 15652 (2023). https://doi.org/10.1038/s41598-023-42599-9
Pathogen metabolite checkpoint: NHR on guard. Rejane Rua, Nathalie Pujol. Immunity 2023 Apr 11;56(4):744-746. doi: 10.1016/j.immuni.2023.03.004
Curvature gradient drives polarized tissue flow in the Drosophila embryo. Emily W. Gehrels, Bandan Chakrabortty, Marc-Eric Perrin, Matthias Merkel, Thomas Lecuit. February 1, 2023 120 (6) e2214205120 https://doi.org/10.1073/pnas.2214205120
Structure and Rheology in Vertex Models under Cell-Shape-Dependent Active Stresses. Shao-Zhen Lin, Matthias Merkel, and Jean-François Rupprecht. Phys. Rev. Lett. 130, 058202, https://doi.org/10.1103/PhysRevLett.130.058202
Soft matter roadmap. Jean-Louis Barrat, Emanuela Del Gado, Stefan U Egelhaaf, Matthias Merkel, Pierre Ronceray and Jean-François Rupprecht. Journal of Physics: Materials, Volume 7, Number 1. DOI 10.1088/2515-7639/ad06cc
Influence of storage and buffer composition on the mechanical behavior of flowing red blood cells. Merlo A, Losserand S, Yaya F, Connes P, Faivre M, Lorthois S, Minetti C, Nader E, Podgorski T, Renoux C, Coupier G, Franceschini E, Biophys J. 2023; 122(2):360-373. doi:10.1016/j.bpj.2022.12.005
Hyper-cores promote localization and efficient seeding in higher-order processes. Marco Mancastroppa, Iacopo Iacopini, Giovanni Petri, Alain Barrat. Commun. 14 , 6223 (2023) https://doi.org/10.1038/s41467-023-41887-2
Distinguishing simple and complex contagion processes on networks. Giulia Cencetti, Diego Andrés Contreras, Marco Mancastroppa, Alain Barrat. Phy. Rev. Lett. 130, 247401 (2023). https://doi.org/10.1103/PhysRevLett.130.247401
Contact networks have small metric backbones that maintain community structure and are primary transmission subgraphs. Rion Brattig Correia, Alain Barrat, Luis M. Rocha. PLoS Comput Biol 19(2): e1010854 (2023) https://doi.org/10.1371/journal.pcbi.1010854
Inferring cell cycle phases from a partially temporal network of protein interactions. Maxime Lucas, Arthur Morris, Alex Townsend-Teague, Laurent Tichit, Bianca H Habermann, Alain Barrat. Cell Reports Methods 3, 100397 (2023) https://doi.org/10.1016/j.crmeth.2023.100397
A gut meta-interactome map reveals modulation of human immunity by microbiome effectors. Veronika Young, Bushra Dohai, Thomas C. A. Hitch, Patrick Hyden, Christine Brun, et al. bioRxiv. doi: https://doi.org/10.1101/2023.09.25.559292

mimicINT: a workflow for microbe-host protein interaction inference. Sébastien A. Choteau, Marceau Cristianini, Kevin Maldonado, Lilian Drets, Mégane Boujeant, Christine Brun, Lionel Spinelli, Andreas Zanzoni. bioRxiv. doi: https://doi.org/10.1101/2022.11.04.515250
Modulation of human kinase activity through direct interaction with SARS-CoV-2 proteins. Bettina Halwachs, Christina S. Moesslacher, Johanna M. Kohlmayr, Sandra Fasching, Sarah Masser, Sébastien A. Choteau, Andreas Zanzoni, Natalia Kunowska, Ulrich Stelzl. bioRxiv. doi: https://doi.org/10.1101/2023.11.27.568816
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis. Sampath Kumar, A., Tian, L., Bolondi, A., Guignard L. et al. Nat Genet 55, 1176–1185 (2023). https://doi.org/10.1038/s41588-023-01435-6
Random Walk with Restart on multilayer networks: from node prioritisation to supervised link prediction and beyond. A. Baptista, G. Brière, A. Baudot. bioRxiv. doi: https://doi.org/10.1101/2023.10.18.562848

Zoo Guide to Network Embedding. A. Baptista, R. J. Sanchez-Garcia, A. Baudot, G. Bianconi. Arxiv. https://doi.org/10.48550/arXiv.2305.03474
Transit time theory for a droplet passing through a slit in pressure-driven low Reynolds-number flows. S. W. Borbas, K. Shen, C. Ji, A. Viallat, E. Helfer, Z. Peng. Micromachines 14, 2040 (2023). https://doi.org/10.3390/mi14112040
Physical mechanisms of red blood cell splenic filtration. A. Moreau, F. Yaya, H. Lu, A. Surendranath, A. Charrier, B. Dehapiot, E. Helfer, A. Viallat, Z. Peng. Proceedings of the National Academy of Sciences 120, e2300095120 (2023). https://doi.org/10.1073/pnas.2300095120
ShIVA: a user-friendly and interactive interface giving biologists control over their single-cell RNA-seq data. Rudy Aussel, Muhammad Asif, Sabrina Chenag, Sébastien Jaeger, Pierre Milpied & Lionel Spinelli. Sci Rep 13, 14377 (2023). https://doi.org/10.1038/s41598-023-40959-z
Enhanced cell viscosity: A new phenotype associated with lamin A/C alterations. Cécile Jebane, Alice-Anaïs Varlet, Marc Karnat, Lucero M. Hernandez- Cedillo, Amélie Lecchi, Frédéric Bedu, Camille Desgrouas, Corinne Vigouroux, Marie-Christine Vantyghem, Annie Viallat, Jean-François Rupprecht, Emmanuèle Helfer, Catherine Badens, iScience Volume 26, ISSUE 10, 107714. https://doi.org/10.1016/j.isci.2023.107714
Body stiffness is a mechanical property that facilitates contact-mediated mate recognition in Caenorhabditis elegans. Jen-Wei Weng, Heenam Park, Claire Valotteau, Rui-Tsung Chen, Clara L. Essmann, Nathalie Pujol, Paul W. Sternberg, Chun-Hao Chen. Curr Biol. 2023 Jul 28;S0960-9822(23)00927-2. https://doi.org/10.1016/j.cub.2023.07.020

Prominent in vivo influence of single interneurons in the developing barrel cortex. Bollmann, Y., Modol, L., Tressard, T., Cossart, R., et al., Nat Neurosci 26, 1555–1565 (2023). https://doi.org/10.1038/s41593-023-01405-5
Alcanivorax borkumensis biofilms enhance oil degradation by interfacial tubulation. M. Prasad, N. Obana, S.-Z. Lin, Jean-François Rupprecht et al., Science 381, 748-753 (2023). DOI: 10.1126/science.adf3345
Analytical theory for a droplet squeezing through a circular pore in creeping flows under constant pressures. Zhengxin Tang (唐正昕), François Yaya, Ethan Sun, Lubna Shah, Jie Xu, Annie Viallat, Emmanuèle Helfer, Zhangli Peng (彭张立). Physics of Fluids 35, 082016 (2023), https://doi.org/10.1063/5.0156349
Talin and kindlin cooperate to control the density of integrin clusters. Pernier J, Cardoso Dos Santos M, Souissi M, Joly A, Narassimprakash H, Rossier O, Giannone G, Helfer E, Sengupta K, Le Clainche C. J Cell Sci. 2023 Apr 15;136(8):jcs260746. doi: 10.1242/jcs.260746. Epub 2023 Apr 21. PMID: 37083041.
Inferring cell cycle phases from a partially temporal network of protein interactions. Maxime Lucas, Arthur Morris, Alex Townsend-Teague, Laurent Tichit, Bianca Habermann, Alain Barrat. Cell Reports Methods, Volume 3, Issue 2, 2023, 100397, ISSN 2667-2375, https://doi.org/10.1016/j.crmeth.2023.100397.
Growth anisotropy of the extracellular matrix shapes a developing organ. Harmansa, S., Erlich, A., Eloy, C. et al. Growth anisotropy of the extracellular matrix shapes a developing organ. Nat Commun 14, 1220 (2023). https://doi.org/10.1038/s41467-023-36739-y
Two-point optical manipulation reveals mechanosensitive remodeling of cell–cell contacts in vivo. Kenji Nishizawa, Shao-Zhen Lin, Claire Chardès, Jean-François Rupprecht and Pierre-François Lenne. PNAS, March 22, 2023, 120 (13) e2212389120, https://doi.org/10.1073/pnas.221238912
Deforming polar active matter in a scalar field gradient. Muhamet Ibrahimi1 and Matthias Merkel1, New Journal of Physics, 13 January 2023, DOI 10.1088/1367-2630/acb2e5

2022

Labelling of Active Transcription Sites with Argonaute NRDE-3-Image Active Transcription Sites in vivo in Caenorhabditis elegans. Antoine Barrière, Vincent Bertrand. Bio Protoc. 2022 June5 12(11):e4427. doi: 10.21769/BioProtoc.4427.
PRC1 chromatin factors strengthen the consistency of neuronal cell fate specification and maintenance in C. elegans. Guillaume Bordet, Carole Couillault, F abien Soulavie, Konstantina Filippopoulou, Vincent Bertrand. Plos Genetics, 2022. https://doi.org/10.1371/journal.pgen.1010209
Mechanical stress driven by rigidity sensing governs epithelial stability. S. Sonam(1), L. Balasubramaniam(1), S.-Z. Lin(1), ..., J.-F. Rupprecht, B. Ladoux Nature Physics (2022)
Active nematic flows on curved surfaces. S. Bell (1), S.-Z. Lin(1), J.-F. Rupprecht, J. Prost ,Physical Review Letters (2022)
Non-linear elastic properties of actin patches to partially rescue yeast endocytosis efficiency in the absence of the cross-linker Sac6. Belbahri R., Michelot A., Heuvingh J.and du Roure O.,Soft Matter, 2022,18, 1479-1488, DOI https://doi.org/10.1039/D1SM01437D (correction in doi: 10.1039/d2sm90083a)
Specialization of actin isoforms derived from the loss of key interactions with regulatory factors. Boiero Sanders M, Toret CP, Guillotin A, Antkowiak A, Vannier T, Robinson RC, Michelot A. EMBO J. 2022 Mar 1;41(5):e107982. doi: 10.15252/embj.2021107982
The cellular slime mold Fonticula alba forms a dynamic, multicellular collective while feeding on bacteria. Christopher Toret, Andrea Picco, Micaela Boiero-Sanders, Alphee Michelot, Marko Kaksonen, Current Biology, Volume 32, Issue 9, 2022, Pages 1961-1973.e4, https://doi.org/10.1016/j.cub.2022.03.018.
Enhanced wild-type MET receptor levels in mouse hepatocytes attenuates insulin-mediated signalling. Rada P.*, Lamballe F., Carceller-López E., Hitos A.B., Sequera C., Maina F.*, Valverde A.M.* Cells, Feb 24;11(5):793 (2022). PMID: 35269415. *shared corresponding authorship.MYC and MET cooperatively drive hepatocellular carcinoma with distinct molecular traits and vulnerabilities. Sequera C., Grattarola M., Holczbauer A., Dono R., Pizzimenti S., Barrera G., Wangensteen K., Maina F. Cell Death and Disease, 24;13(11):994 (2022). PMID: 36433941.
Time-limited alterations in cortical activity of a knock-in mice model of KCNQ2-related developmental and epileptic encephalopathy. Najoua Biba, Hélène Becq, Emilie Pallesi-Pocachard, Stefania Sarno, Samuel Granjeaud, Aurélie Montheil, Marie Kurz, Laurent Villard, Mathieu Milh, Pierre-Pascal Lenck Santini, Laurent Aniksztejn. The Journal of Physiology 2022 Apr 7. doi: https://doi.org/10.1113/JP282536
Un nouveau modèle murin de la malnutrition aiguë sévère infantile révèle un défaut de l’immunité de la plaque de Peyer ainsi qu’une altération du microbiote et du profil métabolomique. F. Hidalgo-Villeda, M. Million, C. Defoort, F. Sicard, M. Lagier, C. Wagner, C. Arroyo-Portilla, L. Chasson, Thomas Vannier, J.-P. Gorvel, H. Lelouard, J. Tomas. Nutrition Clinique et Métabolique 2022 Feb. doi: DOI: 10.1016/j.nupar.2021.12.012
Specialization of actin isoforms derived from the loss of key interactions with regulatory factors. Micaela Boiero Sanders, Christopher P. Toret, Audrey Guillotin, Adrien Antkowiak, Thomas Vannier, Robert C. Robinson and Alphée Michelot. EMBO J 2022 Feb 18;:e107982. doi: 10.15252/embj.2021107982
Stiffening of under-constrained spring networks under isotropic strain. Cheng-Tai Lee, Matthias Merkel. Soft Matter, Issue 29, 2022. https://doi.org/10.1039/D2SM00075J
Phase separation dynamics in deformable droplets. Simon Gsell, Matthias Merkel. Soft Matter, Issue 13, 2022. https://doi.org/10.1039/D1SM01647D
Implementation of cellular bulk stresses in vertex models of biological tissues. Lin, SZ., Merkel, M. & Rupprecht, JF. Eur. Phys. J. E 45, 4 (2022). https://doi.org/10.1140/epje/s10189-021-00154-2
Longitudinal to Transverse Metachronal Wave Transitions in an In Vitro Model of Ciliated Bronchial Epithelium. Olivier Mesdjian, Chenglei Wang, Simon Gsell, Umberto D’Ortona, Julien Favier, Annie Viallat, and Etienne Loiseau. Phys. Rev. Lett. 129, 038101. https://doi.org/10.1103/PhysRevLett.129.038101
Minimizing school disruption under high incidence conditions due to the Omicron variant in France, Switzerland, Italy, in January 2022. Elisabetta Colosi, Giulia Bassignana, Alain Barrat, Bruno Lina, Philippe Vanhems, Julia Bielicki, Vittoria Colizza. Euro Surveill. 2023;28(5):pii=2200192. https://doi.org/10.2807/1560-7917.ES.2023.28.5.2200192
Impact of contact data resolution on the evaluation of interventions in mathematical models of infectious diseases. Diego A Contreras, Elisabetta Colosi, Giulia Bassignana, Vittoria Colizza, Alain Barrat. J. R. Soc. Interface 19:20220164 (2022) https://doi.org/10.1098/rsif.2022.0164
The temporal rich club phenomenon. Nicola Pedreschi, Demian Battaglia, Alain Barrat. Nat. Phys. 18:931 (2022) https://doi.org/10.1038/s41567-022-01634-8
Screening and vaccination against COVID-19 to minimise school closure: a modelling study. Elisabetta Colosi, Giulia Bassignana, Diego A Contreras, Canelle Poirier, Pierre-Yves Boëlle, Simon Cauchemez, Yazdan Yazdanpanah, Bruno Lina, Arnaud Fontanet, Alain Barrat, Vittoria Colizza. Lancet Infect Dis 22:977 (2022) https://doi.org/10.1016/S1473-3099(22)00138-4
Transition from simple to complex contagion in collective decision-making. Nikolaj Horsevad, David Mateo, Robert E. Kooij, Alain Barrat, Roland Bouffanais. Nature Communications 13:1442 (2022) https://doi.org/10.1038/s41467-022-28958-6
In Depth Exploration of the Alternative Proteome of Drosophila melanogaster. Bertrand Fabre, Sebastien A. Choteau, Carine Duboé, Christine Brun et al. Front. Cell Dev. Biol., Volume 10 - 2022. https://doi.org/10.3389/fcell.2022.901351
Epi-MEIF: detecting higher order epistatic interactions for complex traits using mixed effect conditional inference forests. Saswati Saha, Laurent Perrin, Laurence Röder, Christine Brun, Lionel Spinelli. Nucleic Acids Research, Volume 50, Issue 19, 28 October 2022, Page e114, https://doi.org/10.1093/nar/gkac715
Genetic architecture of natural variation of cardiac performance from flies to humans. Saswati Saha, Lionel Spinelli, Laurence Roder, Christine Brun, Jaime A Castro Mondragon, et al. eLife 11:e82459. https://doi.org/10.7554/eLife.82459
MYC and MET cooperatively drive hepatocellular carcinoma with distinct molecular traits and vulnerabilities. Sequera C, Grattarola M, Holczbauer A, Dono R, Pizzimenti S, Barrera G, Wangensteen KJ, Maina F. Cell Death Dis 13, 994 (2022). https://doi.org/10.1038/s41419-022-05411-6
Universal multilayer network exploration by random walk with restart. Baptista, A., Gonzalez, A. & Baudot, A. . Commun Phys 5, 170 (2022). https://doi.org/10.1038/s42005-022-00937-9
A Rare Mutation in LMNB2 Associated with Lipodystrophy Drives Premature Cell Senescence. Varlet, A.-A.; Desgrouas, C.; Jebane, C.; Bonello-Palot, N.; Bourgeois, P.; Levy, N.; Helfer, E.; Dubois, N.; Valero, R.; Badens, C.; et al. A Rare Mutation in LMNB2 Associated with Lipodystrophy Drives Premature Cell Senescence. Cells 2022, 11, 50. https://doi.org/10.3390/cells11010050
Stoichiometry controls the dynamics of liquid condensates of associative proteins. Pierre Ronceray, Yaojun Zhang, Xichong Liu and Ned S. Wingreen, Phys. Rev. Lett. 128, 038102 (2022). arXiv:2101.0116
Contrasting Roles of DOP as a Source of Phosphorus and Energy for Marine Diazotrophs, Filella Alba, Riemann Lasse, Van Wambeke France, Pulido-Villena Elvira, Vogts Angela, Bonnet Sophie, Grosso Olivier, Diaz Julia M., Duhamel Solange, Benavides Mar, Frontiers in Marine Science, Vol. 9 (2022), https://www.frontiersin.org/articles/10.3389/fmars.2022.923765, DOI: 10.3389/fmars.2022.923765, ISSN: 2296-7745
Sinking Trichodesmium fixes nitrogen in the dark ocean. Benavides, M., Bonnet, S., Le Moigne, F.A.C. et al. ISME J 16, 2398–2405 (2022). https://doi.org/10.1038/s41396-022-01289-6
Diazotrophs are overlooked contributors to carbon and nitrogen export to the deep ocean. Bonnet, S., Benavides, M., Le Moigne, F.A.C. et al. ISME J 17, 47–58 (2023). https://doi.org/10.1038/s41396-022-01319-3
Planktonic Aggregates as Hotspots for Heterotrophic Diazotrophy: The Plot Thickens. Riemann Lasse, Rahav Eyal, Passow Uta, Grossart Hans-Peter, de Beer Dirk, Klawonn Isabell, Eichner Meri, Benavides Mar, Bar-Zeev Edo, Frontiers in Microbiology, Vol. 13 (2022), https://www.frontiersin.org/articles/10.3389/fmicb.2022.875050, DOI: 10.3389/fmicb.2022.875050, ISSN=1664-302X
Lrrcc1 and Ccdc61 are conserved effectors of multiciliated cell function. Nommick, A., Boutin, C., Rosnet, O., Schirmer, C., Bazellieres, E., Thome, V., Loiseau, E., Viallat, A. and Kodjabachian, L. 2022. J. Cell Sci. 135(4):jcs258960.
C. elegans: out on an evolutionary limb. (revue). Pujol N, Ewbank JJ.Immunogenetics. 2022 Feb;74(1):63-73. doi: 10.1007/s00251-021-01231-8. PMID: 34761293

2021

Leukocyte transmigration and longitudinal forward-thrusting force in a microfluidic Transwell device. Aoun L, Nègre P, Gonsales C, Seveau de Noray V, Brustlein S, Biarnes-Pelicot M, Valignat MP, Theodoly O. Biophys J. 2021 Jun 1;120(11):2205-2221. doi: 10.1016/j.bpj.2021.03.037. Epub 2021 Apr 8.
Functional Mapping of Adhesiveness on Live Cells Reveals How Guidance Phenotypes Can Emerge From Complex Spatiotemporal Integrin Regulation. Front Bioeng BiotechnolRobert P, Biarnes-Pelicot M, Garcia-Seyda N, Hatoum P, Touchard D, Brustlein S, Nicolas P, Malissen B, Valignat MP, Theodoly O. Front Bioeng Biotechnol. 2021 Apr 7;9:625366. doi: 10.3389/fbioe.2021.625366.
Integrin-Functionalised Giant Unilamellar Vesicles via Gel-Assisted Formation: Good Practices and Pitfalls. Souissi, M.; Pernier, J.; Rossier, O.; Giannone, G.; Le Clainche, C.; Helfer, E.; Sengupta, K. Integrin-Functionalised Giant Unilamellar Vesicles via Gel-Assisted Formation: Good Practices and Pitfalls. Int. J. Mol. Sci. 2021, 22, 6335. https://doi.org/10.3390/ijms22126335
Nucleation landscape of biomolecular condensates. Shimobayashi, S.F., Ronceray, P., Sanders, D.W. et al. Nature (2021). DOI: 10.1038/s41586-021-03905-5
Self-organization and shape change by active polarization in nematic droplets, Fabian Jan Schwarzendahl, Pierre Ronceray, Kimberly L. Weirich, and Kinjal Dasbiswas, Phys. Rev. Research 3, 043061 (2021). arXiv:2102.07442
Physical bioenergetics: Energy fluxes, budgets, and constraints in cells, X Yang, M Heinemann, J Howard, G Huber, S Iyer-Biswas, G Le Treut, M Lynch, KL Montooth, DJ Needleman, S Pigolotti, J Rodenfels, P Ronceray, S Shankar, I Tavassoly, S Thutupalli, DV Titov, J Wang, PJ Foster, PNAS June 29, 2021,118 (26) e2026786118; https://doi.org/10.1073/pnas.2026786118
Misic, a general deep learning-based method for the high-throughput cell segmentation of complex bacterial communities. Swapnesh Panigrahi, Dorothée Murat, Antoine Le Gall, Eugénie Martineau, Kelly Goldlust, Jean-Bernard Fiche, Sara Rombouts, Marcelo Nöllmann, Leon Espinosa, Tâm Mignot. eLife. 2021 Sept. 9;10:e65151. DOI: 10.7554/eLife.65151.
NF-κB-dependent IRF1 activation programs cDC1 dendritic cells to drive antitumor immunity. Ghislat G, Cheema AS, Baudoin E, Verthuy C, Ballester PJ, Crozat K, Attaf N, Dong C, Milpied P, Malissen B, Auphan-Anezin N, Manh TPV, Dalod M, Lawrence T. Sci Immunol. 2021 Jul 9;6(61):eabg3570. doi: 10.1126/sciimmunol.abg3570. PMID: 34244313
Evolution of mechanisms controlling epithelial morphogenesis across animals: new insights from dissociation-reaggregation experiments in the sponge Oscarella lobularis. Vernale A, Prünster MM, Marchianò F, Debost H, Brouilly N, Rocher C, Massey-Harroche D, Renard E, Le Bivic A, Habermann BH, Borchiellini C BMC Ecol Evo 21, 160 (2021). doi: 10.1186/s12862-021-01866-x. PMID: 34418961.
Complete Genome Assembly of Myxococcus xanthus Strain DZ2 Using Long High-Fidelity (HiFi) Reads Generated with PacBio Technology. Jain R, Habermann BH, Mignot T. Microbiol Resour Announc. 2021 Jul 15;10(28):e0053021. doi: 10.1128/MRA.00530-21. Epub 2021 Jul 15. PMID: 34264106; PMCID: PMC8281077.
Enhanced differentiation of human induced pluripotent stem cells toward the midbrain dopaminergic neuron lineage through GLYPICAN-4 downregulation. Serena Corti, Remi Bonjean, Thomas Legier, Diane Rattier, Christophe Melon, Pascal Salin, Erik A. Toso, Michael Kyba, Lydia Kerkerian-Le Goff, Flavio Maina, Rosanna Dono. STEM CELLS Transl Med. 2021; 10: 725– 742. https://doi.org/10.1002/sctm.20-0177
MetamORF: a repository of unique short open reading frames identified by both experimental and computational approaches for gene and metagene analyses, Database. Sebastien A Choteau, Audrey Wagner, Philippe Pierre, Lionel Spinelli, Christine Brun. Volume 2021, 2021, baab032, https://doi.org/10.1093/database/baab032
Formation of polarized contractile interfaces by self-organized Toll-8/Cirl GPCR asymmetry. Lavalou J, Mao Q, Harmansa S, Kerridge S, Lellouch AC, Philippe JM, Audebert S, Camoin L, Lecuit T. Dev Cell. 2021 Apr 27:S1534-5807(21)00270-7. doi: 10.1016/j.devcel.2021.03.030. Online ahead of print. PMID: 33932333
Distinct actin-dependent nanoscale assemblies underlie the dynamic and hierarchical organization of E-cadherin. Chandran R, Kale G, Philippe JM, Lecuit T, Mayor S. Curr Biol. 2021 Apr 26;31(8):1726-1736.e4. doi: 10.1016/j.cub.2021.01.059. Epub 2021 Feb 18. PMID: 33607036
Programmed and self-organized flow of information during morphogenesis. Collinet C, Lecuit T. Nat Rev Mol Cell Biol. 2021 Apr;22(4):245-265. doi: 10.1038/s41580-020-00318-6. Epub 2021 Jan 22. PMID: 33483696 Review.

2020

Spot Variation Fluorescence Correlation Spectroscopy for Analysis of Molecular Diffusion at the Plasma Membrane of Living Cells. Mailfert S, Wojtowicz K, Brustlein S, Blaszczak E, Bertaux N, Łukaszewicz M, Marguet D, Trombik T. J Vis Exp. 2020 Nov 12;(165). doi: 10.3791/61823.
Neuronal specification in elegans: combining lineage inheritance with intercellular signaling. Barrière A. and Bertrand V. (2020). J. Neurogenetics 34, 273-81. DOI : 10.1080/01677063.2020.1781850.
Wnt ligands regulate the asymmetric divisions of neuronal progenitors in elegans embryos. Kaur S., Mélénec P., Murgan S., Bordet G., Recouvreux P., Lenne P.F. and Bertrand V. (2020). Development 147, dev183186.
Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods. Courtine D, Provaznik J, Reboul J, Blanc G, Benes V, Ewbank JJ.. Gigascience. 2020 Sep 18;9(9):giaa099. doi: 10.1093/gigascience/giaa099.
Non-Canonical Caspase Activity Antagonizes p38 MAPK Stress-Priming Function to Support Development. Weaver BP, Weaver YM, Omi S, Yuan W, Ewbank JJ, Han MDev Cell. 2020 May 4;53(3):358-369.e6. doi: 10.1016/j.devcel.2020.03.015. Epub 2020 Apr 16. PMID: 32302544.
Fabrication of sharp silicon arrays to wound Caenorhabditis elegans. Belougne J, Ozerov I, Caillard C, Bedu F, Ewbank JJ. Sci Rep. 2020 Feb 27;10(1):3581. doi: 10.1038/s41598-020-60333-7. PMID: 32108170.
Microtubule plus-end dynamics link wound repair to the innate immune response. Taffoni C, Omi S, Huber C, Mailfert S, Fallet M, Rupprecht JF, Ewbank JJ, Pujol N. Elife. 2020 Jan29;9:e45047. doi: 10.7554/eLife.45047. PMID: 31995031.
New Strains for Tissue-Specific RNAi Studies in Caenorhabditis elegans. Watts JS, Harrison HF, Omi S, Guenthers Q, Dalelio J, Pujol N, Watts JL. G3 (Bethesda). 2020 Nov 5;10(11):4167-4176. doi: 10.1534/g3.120.401749. PMID: 32943454.
IL-17: good fear no tears. Rua R, Pujol N. Nat Immunol. 2020 Nov;21(11):1315-1316. doi: 10.1038/s41590-020-0792-4. PMID: 32958929.
Diversity from Similarity: Cellular Strategies for Assigning Particular Identities to Actin Filaments and Networks. Boiero Sanders M., Antkowiak A., Michelot A*. Open Biol. 2020 Sep;10(9):200157. doi: 10.1098/rsob.200157.
Force Production by a Bundle of Growing Actin Filaments is Limited by its Mechanical Properties. Martiel J.L., Michelot Alphée, Boujemaa-Paterski R., Blanchoin L., Berro J.. Biophys J. 2020 Jan 7;118(1):182-192. doi: 10.1016/j.bpj.2019.10.039.
Assembly of a persistent apical actin network by the formin Frl/Fmnl tunes epithelial cell deformability. Dehapiot, B., Clément, R., Alégot, H. et al. Nat Cell Biol (2020). https://doi.org/10.1038/s41556-020-0524-x.
Coopted temporal patterning governs cellular hierarchy, heterogeneity and metabolism in Drosophila neuroblast tumors. Genovese S, Clément R, Gaultier C, Besse F, Narbonne-Reveau K, Daian F, Foppolo S, Luis NM, Maurange Elife. 2019 Sep 30;8:e50375. doi: 10.7554/eLife.50375. PMID: 31566561.
Towards a general framework for spatio-temporal transcriptomics – LMRL Workshop, Neurips 2020 - J. Pinol, T. Artières, P. Villoutreix. Youtube link.
Human neutrophils swim and phagocytise bacteria. Garcia-Seyda N, Seveau V, Manca F, Biarnes-Pelicot M, Valignat M-P, Bajénoff M and Theodoly O*. Biology of the Cell, doi: 10.1111/boc.202000084.
Amoeboid Swimming Is Propelled by Molecular Paddling in Lymphocytes. Aoun L; Farutin, A; Garcia-Seyda, N; Negre, P; Rizvi, MS; Tlili, S (Tlili, Sham)[ 1,4 ] ; Song, S (Song, Solene)[ 1 ] ; Luo, X; Biarnes-Pelicot, M; Galland, R; Sibarita, JB ; Michelot; Hivroz, C; Rafai, S; Valignat, MP ; Misbah*, C; Theodoly, O*, Biophysical Journal, 119, 6,1157-1177, doi: 10.1016/j.bpj.2020.07.033.
Lymphocytes perform reverse adhesive haptotaxis mediated by LFA-1 integrins. Luo, X ; de Noray, VS ; Aoun, L; Biarnes-Pelicot, M ; Strale, PO; Studer, V; Valignat, MP; Theodoly, O*. Journal of Cell Science, 133, 16, Article Number: jcs242883, DOI: 10.1242/jcs.242883, 2020.
Three-dimensional imaging with reflection synthetic confocal microscopy. Rasedujjaman, M ; Affannoukou, K; Garcia-Seyda, N; Robert, P; Giovannini, H ; Chaumet, PC; Theodoly O; Valignat, MP; Belkebir,; Sentenac, A; Guillaume Maire . Optics Letters 2020, 45, 13, 3721-3724. doi: 10.1364/OL.397364.
Microfluidic device to study flow-free chemotaxis of swimming cells. Garcia-Seyda N, Aoun L, Tishkova V, Seveau V, Biarnes-Pelicot M, Bajenoff M, Valignat MP, Olivier Theodoly* Chip. 2020;20(9):1639–1647, (2020). doi: 10.1039/d0lc00045k.
A Bistable Mechanism Mediated by Integrins Controls Mechanotaxis of Leukocytes. A. Hornung, T. Sbarrato, N. Garcia-Seyda, L. Aoun, X. Luo, M. Biarnes-Pelicot, Theodoly*, MP. Valignat*. Biophys. J. 2020;118(3):565–577, (2020). DOI: 10.1016/j.bpj.2019.12.013.
Deterministic and Stochastic Rules of Branching Govern Dendrite Morphogenesis of Sensory Neurons. Palavalli A, Tizón-Escamilla N, Rupprecht JF, Lecuit T. Curr Biol. 2021 Feb 8;31(3):459-472.e4. doi: 10.1016/j.cub.2020.10.054. Epub 2020 Nov 18.
Adhesion-mediated heterogeneous actin organization governs apoptotic cell extrusion. A. P. Le, J.-F. Rupprecht, R.-M. Mège, Y. Toyama, C. T. Lim, B. Ladoux, Nature Communications (2020).
Embryonic geometry underlies phenotypic variation in decanalized conditions. A. Huang, J.-F. Rupprecht and T. E. Saunders eLife (2020).
Measuring social networks in primates: wearable sensors vs. direct observations, V. Gelardi, J. Godard, D. Paleressompoulle, N. Claidière, A. Barrat, Proc. R. Soc. A 476:20190737 (2020)
Relevance of temporal cores for epidemic spread in temporal networks, M. Ciaperoni, E. Galimberti, F. Bonchi, C. Cattuto, F. Gullo, A. Barrat, Scientific Reports 10:12529 (2020)
Dynamic core periphery structure of information sharing networks in entorhinal cortex and hippocampus, N. Pedreschi, C. Bernard, W. Clawson, P. Quilichini, A. Barrat, D. Battaglia, Network Neuroscience 4:946 (2020)
Modeling Heterogeneity of Triple-Negative Breast Cancer Uncovers a Novel Combinatorial Treatment Overcoming Primary Drug Resistance. Lamballe F., Ahmad F., Vinik Y., Castellanet O., Daian F., Müller A.K., Köhler U.A., Bailly A.L., Josselin E., Castellano R. Cayrou C., Charafe-Jauffret E., Mills G.B., Géli V., Borg J.P., Lev S., Maina F. Advanced Science, Dec 16;8(3):2003049 (2020). PMID: 33552868.
Enhanced differentiation of human induced pluripotent stem cells towards the midbrain dopaminergic neuron lineage through GLYPICAN-4 down regulation. Corti S., Bonjean R., Rattier D., Legier T., Melon C., Salin P., Toso E.A., Kyba M., Kerkerian-Le Goff L., Maina F., Dono R. Stem Cells Translational Medicine, Feb 2 (2021). PMID: 33528918.
C3G is upregulated in hepatocarcinoma, contributing to tumor growth and progression and to HGF/MET pathway activation. Sequera C., Bragado P., Manzano S., Arechederra M., Richelme S., Gutiérrez-Uzquiza A., Sánchez A., Maina F., Guerrero C., Porras A. Cancers, Aug 14;12(8):2282 (2020). PMID: 32823931.
The Dorsal Striatum Energizes Motor Routines. Jurado-Parras MT, Safaie M, Sarno S, Louis J, Karoutchi C, Berret B, Robbe D. Current biology : CB - Sep 2020
Turning the body into a clock: Accurate timing is facilitated by simple stereotyped interactions with the environment. Mostafa Safaie, Maria-Teresa Jurado-Parras, Stefania Sarno, Jordane Louis, Corane Karoutchi, Ludovic F. Petit, Matthieu O. Pasquet, Christophe Eloy, and David Robbe. PNAS June 9, 2020 117 (23) 13084-13093; first published May 20, 2020 https://doi.org/10.1073/pnas.1921226117
The activation trajectory of plasmacytoid dendritic cells in vivo during a viral infection. Abbas A, Vu Manh TP, Valente M, Collinet N, Attaf N, Dong C, Naciri K, Chelbi R, Brelurut G, Cervera-Marzal I, Rauwel B, Davignon JL, Bessou G, Thomas-Chollier M, Thieffry D, Villani AC, Milpied P, Dalod M, Tomasello E. Nat Immunol. 2020. doi: 10.1038/s41590-020-0731-4.
The quest for faithful in vitro models of human dendritic cells types. Luo XL, Dalod M. Mol Immunol. 2020. doi: 10.1016/j.molimm.2020.04.018.
Anisotropy links cell shapes to tissue flow during convergent extension. Xun Wang, Matthias Merkel, Leo B. Sutter, Gonca Erdemci-Tandogan, M. Lisa Manning, and Karen E. Kasza. PNAS June 16, 2020 117 (24) 13541-13551; first published May 28, 2020; https://doi.org/10.1073/pnas.1916418117.
An NF-κB/IRF1 axis programs cDC1s to drive anti-tumor immunity. Ghislat G, Cheema AS, Baudoin E, Verthuy C, Ballester PJ, Crozat K, Attaf N, Dong C, Milpied P, Malissen B, Auphan-Anezin N, Vu Manh TP, Dalod M, Lawrence T. bioRxiv 2020.12.28.424621; doi: https://doi.org/10.1101/2020.12.28.424621.
Active mucus–cilia hydrodynamic coupling drives self-organization of human bronchial epithelium.Loiseau, E., Gsell, S., Nommick, A. et al. Nat. Phys. (2020). https://doi.org/10.1038/s41567-020-0980-z.
NK cells orchestrate splenic cDC1 migration to potentiate antiviral protective CD8+ T cell responses. Ghilas S, Ambrosini M, Cancel JC, Massé M, Lelouard H, Dalod M, Crozat K. bioRxiv 2020.04.23.057463; doi: https://doi.org/10.1101/2020.04.23.057463.
cDC1 and interferons promote spontaneous CD4+ and CD8+ T cell protective responses to breast cancer. Mattiuz R, Brousse C, Ambrosini M, Cancel JC, Bessou G, Mussard J, Sanlaville A, Caux C, Bendriss-Vermare N, Valladeau-Guilemond J, Dalod M, Crozat K. bioRxiv 2020.12.23.424092; doi: https://doi.org/10.1101/2020.12.23.424092
Networks beyond pairwise interactions: Structure and dynamics. Federico Battiston, Giulia Cencetti, Iacopo Iacopini, Vito Latora, Maxime Lucas, Alice Patania, Jean-Gabriel Young, and Giovanni Petri. Physics Reports, 874:1--92, 2020. Networks beyond pairwise interactions: Structure and dynamics.
Hippocampal hub neurons maintain distinct connectivity throughout their lifetime. Bocchio M, Gouny C, Angulo-Garcia D, Toulat T, Tressard T, Quiroli E, Baude A, Cossart R. Nat Commun. 2020 Sep 11;11(1):4559. doi: 10.1038/s41467-020-18432-6. PMID: 32917906 Free PMC article.
Antagonistic fungal enterotoxins intersect at multiple levels with host innate immune defences. Xing Zhang, Benjamin Harding, Dina Aggad, Damien Courtine, Jia-Xuan Chen, Nathalie Pujol, and Jonathan Ewbank. bioRxiv 2020.11.23.391201; doi: 10.1101/2020.11.23.391201.
Multiorder laplacian for synchronization in higher-order networks. Maxime Lucas, Giulia Cencetti, and Federico Battiston. Phys. Rev. Research, 2:033410, Sep 2020.
DeepCINAC: A Deep-Learning-Based Python Toolbox for Inferring Calcium Imaging Neuronal Activity Based on Movie Visualization. Denis J, Dard RF, Quiroli E, Cossart R, Picardo MA. eNeuro. 2020 Aug 17;7(4):ENEURO.0038-20.2020. doi: 10.1523/ENEURO.0038-20.2020. Print 2020 Jul/Aug. PMID: 32699072.
GABAergic Restriction of Network Dynamics Regulates Interneuron Survival in the Developing Cortex. Duan ZRS, Che A, Chu P, Modol L, Bollmann Y, Babij R, Fetcho RN, Otsuka T, Fuccillo MV, Liston C, Pisapia DJ, Cossart R, De Marco García NV. Neuron. 2020 Jan 8;105(1):75-92.e5. doi: 10.1016/j.neuron.2019.10.008. Epub 2019 Nov 25. PMID: 31780329 Free PMC article.
Assemblies of Perisomatic GABAergic Neurons in the Developing Barrel Cortex. Modol L, Bollmann Y, Tressard T, Baude A, Che A, Duan ZRS, Babij R, De Marco García NV, Cossart R. Neuron. 2020 Jan 8;105(1):93-105.e4. doi: 10.1016/j.neuron.2019.10.007. Epub 2019 Nov 25. PMID: 31780328 Free PMC article.

2019

Self-organization of red blood cell suspensions under confined 2D flows. C. Iss, D. Midou, A. Moreau, D. Held, A. Charrier, S. Mendez, A. Viallat, E. Helfer. Soft Matter 15, 2971 (2019)
White blood cells dynamics in micro-flows. A. Viallat, J. Dupire, E. Helfer. In : Blood Cells Suspension Dynamics in Microflows, CRC Press (2019)
Are Conventional Type 1 Dendritic Cells Critical for Protective Antitumor Immunity and How? Cancel JC, Crozat K, Dalod M, Mattiuz R. Front Immunol. 2019;10:9. doi: 10.3389/fimmu.2019.00009.
A minimal-length approach unifies rigidity in underconstrained materials. Matthias Merkel, Karsten Baumgarten, Brian P. Tighe, M. Lisa Manning. Proceedings of the National Academy of Sciences Apr 2019, 116 (14) 6560-6568; DOI: 10.1073/pnas.1815436116
Matrix metalloproteinase 1 modulates invasive behavior of tracheal branches during entry into Drosophila flight muscles. Sauerwald J, Backer W, Matzat T, Schnorrer F, Luschnig S. eLife. pii: e48857. doi: 10.7554/eLife.48857.
A small proportion of Talin molecules transmit forces at developing muscle attachments in vivo. Lemke SB, Weidemann T, Cost AL, Grashoff C, and Schnorrer F. (2019). PLoS Biology. 17(3):e3000057. doi: 10.1371/journal.pbio.3000057
1 contributes to a rapid homeostatic plasticity of intrinsic excitability in CA1 pyramidal neurons in vivo. Morgan PJ, Bourboulou R, Filippi C, Koenig-Gambini J, Epsztein J. Elife. 2019 Nov 27;8.
Dynamic control of hippocampal spatial coding resolution by local visual cues. Bourboulou R, Marti G, Michon FX, El Feghaly E, Nouguier M, Robbe D, Koenig J, Epsztein J. Elife. 2019 Mar 1;8
Genetic induction and mechanochemical propagation of a morphogenetic wave; Baille, A, Collinet C, Philippe JM, Lenne PF, Munro E, Lecuit T. Nature. 2019 Aug;572(7770):467-473. doi: 10.1038/s41586-019-1492-9. Epub 2019 Aug 15. PMID: 31413363
Experimental validation of force inference in epithelia from cell to tissue scale; Kong W, et al. Sci Rep 2019. PMID 31601854
Mechanical Stiffness of Reconstituted Actin Patches Correlates Tightly with Endocytosis Efficiency. PLANADE J, BELBAHRI R, BOEIRO SANDERS M, GUILLOTIN A, DU ROURE O, MICHELOT A*, HEUVINGH J. PLoS Biol. 2019 Oct 25 ;17(10) :e3000500
Sizes of actin networks sharing a common environment are determined by the relative rates of assembly. ANTKOWIAK A, GUILLOTIN A, BOEIRO SANDERS M, COLOMBO J, VINCENTELLI R, MICHELOT A*. PLoS Biol. 2019 Jun 10 ;17(6) :e3000317
Internal representation of hippocampal neuronal population spans a time-distance continuum. Haimerl C, Angulo-Garcia D, Villette V, Reichinnek S, Torcini A, Cossart R, Malvache A. Proc Natl Acad Sci U S A. 2019 Apr 9;116(15):7477-7482. doi: 10.1073/pnas.1718518116
Distinct RhoGEFs activate apical and junctional actomyosin contractility under control of G proteins during epithelial morphogenesis. Alain Garcia De Las Bayonas, Jean-Marc Philippe, Annemarie C. Lellouch, Thomas Lecuit. Current Biology. 2019 Oct 21;29(20):3370-3385.e7. DOI: 10.1016/j.cub.2019.08.017

2018

Distinct contributions of tensile and shear stress on E-cadherin levels during morphogenesis.Kale GR, Yang X, Philippe JM, Mani M, Lenne PF, Lecuit T. Nat Commun. 2018 Nov 27;9(1):5021. doi: 10.1038/s41467-018-07448-8. PMID: 30479400
Novel Cre-Expressing Mouse Strains Permitting to Selectively Track and Edit Type 1 Conventional Dendritic Cells Facilitate Disentangling Their Complexity in vivo. Mattiuz R, Wohn C, Ghilas S, Ambrosini M, Alexandre YO, Sanchez C, Fries A, Vu Manh TP, Malissen B, Dalod M, Crozat K. Front Immunol. 2018;9:2805. doi: 10.3389/fimmu.2018.02805.
Quantitative Control of GPCR Organization and Signaling by Endocytosis in Epithelial Morphogenesis. Jha A, van Zanten TS, Philippe JM, Mayor S, Lecuit T., Curr Biol. 2018 May 21;28(10):1570-1584.e6. doi: 10.1016/j.cub.2018.03.068. Epub 2018 May 3.
Strengthen Your Junctions to Resist the Force. Lellouch AC, de Las Bayonas AG, Lecuit T. Dev Cell. 2018 Nov 19;47(4):406-407. doi: 10.1016/j.devcel.2018.11.007. PMID: 30458136