CENTURI Scientific Publications
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Volatile and non-volatile pathogen cues shape host extracellular vesicles production in pre-infection response.
Kołodziejska K, Szczepańska A, Vadlamani S, Ponath Sukumaran R, Radkiewicz M, Bringmann H, Pujol N, Pokrzywa W, Turek M.
Nat Commun. 2025 Dec 21;17(1):1038. doi: 10.1038/s41467-025-67789-z.
PMID: 41423679 -
A knock-in translational reporter for NLP-29 reveals AMP secretion to the apical extracellular matrices following epidermal damage in Caenorhabditis elegans.
Pujol N, Bringmann H.
MicroPubl Biol. 2025 Mar 29;2025:10.17912/micropub.biology.001435. doi: 10.17912/micropub.biology.001435.
PMID: 40226512 -
A defining member of the new cysteine-cradle family is an aECM protein signalling skin damage in C. elegans.
Sonntag T, Omi S, Andreeva A, Valotteau C, Eichelbrenner J, Chisholm AD, Ward JD, Pujol N.
PLoS Genet. 2025 Mar 20;21(3):e1011593. doi: 10.1371/journal.pgen.1011593. PMID: 40112269 -
Plasmacytoid dendritic cells are dispensable or detrimental in murine systemic or respiratory viral infections.
Ngo C, Pierini-Malosse C, Rahmani K, Valente M, Collinet N, Bessou G, Guerry C, Fabregue M, Mathieu S, Sharkaoui S, Mazzoli S, Sansoni A, Fiore F, Laprie C, AlexopoulouL, Gaya M, Gregoire C, Broggi A, Wurbel S, Rua R, Haidar N, Milpied P, Escalière B, Vu Manh TP, Fallet M, Chasson L, Tran H, Baranek T, Le Bert M, Malissen B, Zarubica A, Dalod M, Tomasello E.
Nat Immunol. 2025. doi: 10.1038/s41590-025-02288-3. PMID: 41023479. -
Identity, Functions, and the Spatiotemporal Maturation of Type 1 Conventional Dendritic Cells.
Akyol R, Dalod M.
Immunol Rev. 2025. doi: 10.1111/imr.70079. PMID: 41290543. -
Ontogenetic Diversification of Type 2 Conventional Dendritic Cells in the Bone Marrow: A Central Logic for Peripheral Immunity.
Baber RW, Magalhães-Patrício MÂ, Pires MV, Correia V, Lozano-Gil JM, Guimarães JC, Brown CC, Dalod M, Minutti CM.
ImmunolRev. 2025. doi: 10.1111/imr.70077. PMID: 41258720. -
Intratumoral delivery of FLT3L with CXCR3/CCR5 ligands promotesXCR1+ cDC1 infiltration and activates anti-tumor immunity.
Gorline L, do Carmo FLR, Bourdely P, Bornères J, Vaudiau N, Semervil A, Vetillard M, Coulibaly ASK, Jugniot N, Ok A, Bausart M, Fiquet O, Andrade M, Fardol D, Haddar I, Abou Nader Z, Weber J, Theobald H, Collin M, Calmette J, Anselmi G, Fico F, Ginhoux F, Majlessi L, Gautier EL, Saveanu L, Helft J, Dalod M, Dusseaux M, Di Santo JP, Hugues S, Guermonprez P.
Nat Commun. 2025. doi:10.1038/s41467-025-68018-3. PMID: 41469380. -
Metallophilic marginal zone macrophages cross-prime CD8+ T cell- mediated protective immunity againstblood-borne tumors. Immunity.
Mauvais FX, Hamel Y, Silvin A, Mulder K, Hildner K, Akyol R, Dalod M, Koumantou D, Saveanu L, Garfa M, Cagnard N, Bertocci B, Ginhoux F, van Endert P.
2025. doi: 10.1016/j.immuni.2025.02.027. PMID:40139188.
- Mechanical regulation of substrate adhesion and de-adhesion drives a cell-contractile wave during Drosophila tissue morphogenesis.
Collinet C, Bailles A, Dehapiot B, Lecuit T.
Dev Cell. 2024 Jan 8;59(1):156-172.e7. doi: 10.1016/j.devcel.2023.11.022. - Comparative Study of Transformer Robustness for Multiple Particle Tracking Without Clutter
P. Mishra and P. Roudot,
2024 32nd European Signal Processing Conference (EUSIPCO), Lyon, France, 2024, pp. 571-575, doi: 10.23919/EUSIPCO63174.2024.10715042. - Crb3 is required to organize the apical domain of multiciliated cells
Céline Burcklé, Juliette Raitière, Grégoire Michaux, Laurent Kodjabachian, André Le Bivic
J Cell Sci 2024 Mar 1;137(5):jcs261046.
doi: 10.1242/jcs.261046. Epub 2023 Nov 24. - The zonula adherens matura redefines the apical junction of intestinal epithelia
Pierre Mangeol, Dominique Massey-Harroche, Michael Sebbagh, Fabrice Richard, André Le Bivic, Pierre-François Lenne
Proc Natl Acad Sci U S A 2024 Feb 27;121(9):e2316722121.
doi: 10.1073/pnas.2316722121. Epub 2024 Feb 20. - Zonula adherens matura: A new intestinal cell junction
Pierre Mangeol, Dominique Massey-Harroche, Michael Sebbagh, Fabrice Richard, Pierre-François Lenne, André Le Bivic
Med Sci (Paris) 2024 Dec;40(12):985-988.
doi: 10.1051/medsci/2024170. Epub 2024 Dec 20. - The placozoan Trichoplax
Marvin Leria, Magali Requin, André Le Bivic, Andrea Pasini
Nat Methods, 2024 Apr;21(4):543-545
doi: 10.1038/s41592-024-02228-3. - Alphavirus nsP3 organizes into tubular scaffolds essential for infection and the cytoplasmic granule architecture
Kril, V., Hons, M. co-1st, Amadori, C. Zimberger C, Couture L, Bouery Y, Burlaud-Gaillard J, Karpov A, Ptchelkine D, Thienel AL, Kümmerer BM, Desfosses A, Jones R, Roingeard P, Meertens L, Amara, A*. Reguera, J*.
Nat Commun 15, 8106 (2024) - SpecificRequirement of the p84/p110γ Complex of PI3Kγ for Antibody-Activated, Inducible Cross-Presentation in Murine Type 2 DCs.
Koumantou D, Adiko AC, Bourdely P, Nugue M, Boedec E, El-Benna J, Monteiro R,Saveanu C, Laffargue M, Wymann MP, Dalod M, Guermonprez P, Saveanu L.
Adv Sci (Weinh). 2024 Nov;11(44):e2401179. doi: 10.1002/advs.202401179. Epub 2024 Oct 9. PMID: 39382167; PMCID: PMC11600261. - SARS- CoV2 infection in whole lung primarily targets macrophages that display subset- specific responses.
Vu Manh TP, Gouin C, De Wolf J, Jouneau L, Pascale F, Bevilacqua C, Ar Gouilh M, Da Costa B, Chevalier C, Glorion M, Hannouche L, Urien C, Estephan J, Magnan A, Le GuenM, Marquant Q, Descamps D, Dalod M, Schwartz-Cornil I, Sage E. Cell Mol Life Sci. 2024 Aug 15;81(1):351. doi: 10.1007/s00018-024-05322-z. PMID: 39147987; PMCID: PMC11335275 - The role of plasmacytoid dendritic cells (pDCs) in immunity during viral infections and beyond.
Ngo C, Garrec C, Tomasello E, Dalod M. Cell Mol Immunol. 2024 Sep;21(9):1008-1035. doi: 10.1038/s41423-024-01167-5. Epub 2024 May 22. PMID: 38777879; PMCID: PMC11364676 - Dendritic cell-targeted therapy expands CD8 T cell responses to bona-fide neoantigens in lung tumors.
López L, Morosi LG, La Terza F, Bourdely P, Rospo G, Amadio R, Piperno GM, Russo V, Volponi C, Vodret S, Joshi S, Giannese F, Lazarevic D, Germano G, Stoitzner P, Bardelli A, Dalod M, Pace L, Caronni N, Guermonprez P, Benvenuti F. Nat Commun. 2024 Mar 13;15(1):2280. doi: 10.1038/s41467-024-46685-y. PMID: 38480738; PMCID: PMC10937682 - Distinct ontogenetic lineages dictate cDC2 heterogeneity.
Minutti CM, Piot C, Pereira da Costa M, Chakravarty P, Rogers N, Huerga Encabo H, Cardoso A, Loong J, Bessou G, Mionnet C, Langhorne J, Bonnet D, Dalod M, Tomasello E, Reis E Sousa C. Nat Immunol. 2024 Mar;25(3):448-461. doi: 10.1038/s41590-024-01745-9. Epub 2024 Feb 13. PMID: 38351322; PMCID: PMC10907303 - Nonlinear mechanosensation in fiber networks
Estelle Berthier, Haiqian Yang, Ming Guo, Pierre Ronceray, and Chase P. Broedersz - How Do Particles with Complex Interactions Self-Assemble?
Lara Koehler, Pierre Ronceray, and Martin Lenz - Inferring geometrical dynamics of cell nucleus translocation
Sirine Amiri, Yirui Zhang, Andonis Gerardos, Cécile Sykes, and Pierre Ronceray - Survival probability and position distribution of a run and tumble particle in potential with an absorbing boundary
Sujit Kumar Nath and Sanjib Sabhapandit - Partition sum of thermal, underconstrained systems
Cheng-Tai Lee and Matthias Merkel, PRE, https://doi.org/10.1103/PhysRevE.110.064147 - Generic Elasticity of Thermal, Underconstrained Systems
Cheng-Tai Lee and Matthias Merkel,
PRL https://doi.org/10.1103/PhysRevLett.133.268201 - Assessment of coupled bilayer–cytoskeleton modelling strategy for red blood cell dynamics in flow
V. Puthumana, P.G. Chen, M. Leonetti, R. Lasserre and M. Jaeger
J. Fluid Mech. (2024), vol. 979, A44, doi:10.1017/jfm.2023.1092
- Substrate stiffness alters layer architecture and biophysics of human induced pluripotent stem cells to modulate their differentiation potential
Jack Llewellyn, Anne Charrier, Rossana Cuciniello, Emmanuèle Helfer, Rosanna Dono
iScience 27:110557 (2024)10.1016/j.isci.2024.110557 - Crb3 is required to organize the apical domain of multiciliated cells.
Burcklé*, C., Raitière, J., G. Michaux, Kodjabachian, L&. and Le Bivic&, A. 2024. &co-senior authors. *corresponding author. J. Cell Sci. 137(5):jcs261046 - Characterization of a vertebrate Vangl2 translational variant required for PCP.
Walton, A$., Thomé, V$., Revinski, D., Puvirajesinghe, T., Audebert, S., Camoin, L., Marchetto, S., Bailly, E.*., Kodjabachian, L*., and Borg, J-P*. 2024. $contributed equally, *corresponding authors. J. Biol. Chem. 300(4):106792. PMID: 38403249 - The placozoan Trichoplax
Marvin Leria, Magali Requin, André Le Bivic & Andrea Pasini - Lymphotoxin limits Foxp3+ regulatory T cell development from Foxp3lo precursors via IL-4 signaling
Alexia Borelli, Jérémy C. Santamaria, Cloé Zamit, Cécile Apert, Jessica Chevallier, Philippe Pierre, Rafael J. Argüello, Lionel Spinelli & Magali Irla - RANKL treatment restores thymic function and improves T cell–mediated immune responses in aged mice
Jérémy C. Santamaria, Jessica Chevallier, Léa Dutour, Amandine Picart, Camille Kergaravat, Agata Cieslak,, Mourad Amrane, Renaud Vincentelli, Denis Puthier, Emmanuel Clave, Arnauld Sergé, Martine Cohen- Solal, Antoine Toubert, Magali Irla - Transfer of polarity information via diffusion of Wnt ligands in C. elegans embryos
Recouvreux P., Pai P., Dunsing V., Torro R., Ludanyi M., Mélénec P., Boughzala M., Bertrand V. and Lenne P.F. (2024).
Current Biology 34, 1853-65. - Left/right asymmetrically expressed ephrin and Flamingo proteins regulate lateralized axon growth in C. elegans
Buyannemekh K., Villoutreix P. and Bertrand V. (2025)
Developmental Biology 517, 117-125. - E-cadherin-dependent phosphorylation of EGFR governs a homeostatic feedback loop controlling intercellular junction viscosity and collective migration modes
C. Fu(1), F. Dilasser(1), S.-Z. Lin(1), M. Karnat(1), A. Arora, H. Rajendiran, H. T. Ong, N. M. Hoon Brenda, S. W. Phow, T. Hirashima, M. P. Sheetz, J.-F. Rupprecht*, S. Tlili*, V. Viasnoff*
PNAS (2024) [bioRxiv version] - Membrane tilt drives phase separation of adhesion receptors
S.-Z. Lin, R. Changede, A. J. Farrugia, A. D. Bershadsky, M. P. Sheetz, J. Prost, J.-F. Rupprecht
Physical Review Letters (2024) [arXiv version] - Curvature-induced clustering of cell adhesion proteins
S.-Z. Lin, J. Prost, J.-F. Rupprecht
Physical Review E (2024), Editor Suggestion [arXiv version] - Syngap1 promotes cognitive function through regulation of cortical sensorimotor dynamics.
Vaissiere T, Michaelson SD, Creson T, Goins J, Fürth D, Balazsfi D, Rojas C, Golovin R, Meletis K, Miller CA, O'Connor D, Fontolan L, Rumbaugh G
Nat Commun. 2025 Jan 18;16(1):812. doi: 10.1038/s41467-025-56125-0. PMID: 39827187; PMCID: PMC11743135 - Single-cell morphometrics reveals T-box gene-dependent patterns of epithelial tension in the Second Heart field
Clara Guijarro+, Solène Song+, Benoit Aigouy, Raphael Clement, Paul Villoutreix*, Robert G. Kelly* – Nature Communications, 2024 - Spatial reconstruction of single-cell enhancer activity in a multicellular organism
Baptiste Alberti, Séverine Vincent, Isabelle Stévant, Damien Lajoignie, Hélène Tarayre, Paul Villoutreix, Yad Ghalvi-Helm – bioRxiv 2024 - Left/right asymmetrically expressed ephrin and Flamingo proteins regulate lateralized axon growth in C. elegans
Khulganaa Buyannemekh, Paul Villoutreix, Vincent Bertrand – Developmental Biology, 2024 - Hierarchical novel class discovery for single-cell transcriptomic profiles
Malek Senoussi, Thierry Artières, Paul Villoutreix – arXiv, 2024 - Assessing the relative contributions of mosaic and regulatory developmental modes from single-cell trajectories
Solène Song, Paul Villoutreix – bioRxiv, 2024 - MOTL: enhancing multi-omics matrix factorization with transfer learning
David Hirst, Morgane Térézol, Laura Cantini, Paul Villoutreix, Matthieu Vignes, Anaïs Baudot – bioRxiv, 2024 - Limited column formation in the embryonic growth plate implies divergent growth mechanisms during pre- and postnatal bone development
Sarah Rubin, Ankit Agrawal, Anne Seewald, Meng-Jia Lian, Livia Gottdenker, Paul Villoutreix, Adrian Baule, Tomer Stern, Elazar Zelzer – eLife, 2024 - Partial label learning for automated classification of single cell transcriptomic profiles
Malek Senoussi, Thierry Artières*, Paul Villoutreix* – PLoS Computational Biology, 2024 - A defining member of the new cysteine-cradle family is an aECM protein signalling skin damage in C. elegans.
Sonntag T, Omi S, Andreeva A, Eichelbrenner J, Chisholm AD, Ward JD, Pujol N.
BioRxiv [Preprint]. 2024 Nov 5:2024.04.11.589058. doi: 10.1101/2024.04.11.589058.PMID: 39574764 - C. elegans epicuticlins define specific compartments in the apical extracellular matrix and function in wound repair.
Pooranachithra M, Jyo EM, Brouilly N, Pujol N, Ernst AM, Chisholm AD.
Development. 2024 Nov 1;151(21):dev204330. doi: 10.1242/dev.204330. Epub 2024 Oct 23.PMID: 39373389 - The Caenorhabditis elegans cuticle and precuticle: a model for studying dynamic apical extracellular matrices in vivo.
Sundaram MV, Pujol N.
Genetics. 2024 Aug 7;227(4):iyae072. doi: 10.1093/genetics/iyae072.PMID: 38995735 Review. - Membrane tilt drives phase separation of adhesion receptors. S.-Z. Lin, R. Changede, A. J. Farrugia, A. D. Bershadsky, M. P. Sheetz, J. Prost, J.-F. Rupprecht, Physical Review Letters, https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.132.188402
- PatternJ: an ImageJ toolset for the automated and quantitative analysis of regular spatial patterns found in sarcomeres, axons, somites, and more. Mélina Baheux Blin, Vincent Loreau, Frank Schnorrer, Pierre Mangeol. BioRxiv 2024 Jan 20. doi: https://doi.org/10.1101/2024.01.17.576053
- Dissolved organic matter offsets the detrimental effects of climate change in the nitrogen-fixing cyanobacterium Crocosphaera. Alba Filella, Jacqueline Umbricht, Angelina Klett, Angela Vogts, Thomas Vannier, Olivier Grosso, Maren Voss, Lasse Riemann, Mar Benavides. Limnology and Oceanography Letters 2024 Mar 5. doi: https://doi.org/10.1002/lol2.10380.
- u-track3D: Measuring, navigating, and validating dense particle trajectories in three dimensions. Roudot et al.,. Cell Reports Methods, vol. 3, no. 12, p. 100655, Dec. 2023, doi: 10.1016/j.crmeth.2023.100655.
- A Detector-Independent Quality Score for Cell Segmentation Without Ground Truth in 3D Live Fluorescence Microscopy. Vanaret, V. Dupuis, P.-F. Lenne, F. Richard, S. Tlili, and P. Roudot. IEEE Journal of Selected Topics in Quantum Electronics, vol. 29, no. 4: Biophotonics, pp. 1–12, Jul. 2023, doi: 10.1109/JSTQE.2023.3275108.
- Curvature-induced cell rearrangements in biological tissues. Y. Lou, S. Theis, J.-F. Rupprecht, T. Hiraiwa, T. E. Saunders
Physical Review Letters (2023) DOI:10.1103/PhysRevLett.130.108401 https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.130.108401 - Structure and Rheology in Vertex Models under Cell-Shape-Dependent Active Stresses. S.-Z. Lin, M. Merkel, J.-F. Rupprecht Physical Review Letters (2023) DOI:10.1103/PhysRevLett.130.058202 https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.130.058202
- pH gradients guide ADF/cofilin isoforms in pollen tubes. Dinet C., Michelot A. Journal of Cell Biology (JCB) 222(11), 2023 Oct, DOI:10.1083/jcb.202310012
- Reconstitution of actin-based cellular processes: Why encapsulation changes the rules. Kandiyoth FB, Michelot A. Eur J Cell Biol. 2023 Dec;102(4):151368. doi: 10.1016/j.ejcb.2023.151368. Epub 2023 Oct 30. PMID: 37922812.
- Protocol to image and analyze hippocampal network dynamics in non-anesthetized mouse pups. Ratsifandrihamanana, M. R., Dard, R. F., Denis, J., Cossart, R. & Picardo, M. A. STAR Protoc. 4, 102760 (2023). DOI: 10.1016/j.xpro.2023.102760
- Extrinsic control of the early postnatal CA1 hippocampal circuits. Leprince, E. et al. Neuron 111, 888-902.e8 (2023). doi: https://doi.org/10.1101/2022.06.03.494656
- Cortical neuronal assemblies coordinate with EEG microstate dynamics during resting wakefulness. Boyce, R., Dard, R. F. & Cossart, R. Cell Rep. 42, 112053 (2023). DOI: 10.1016/j.celrep.2023.112053
- Classification of red cell dynamics with convolutional and recurrent neural networks: a sickle cell disease case study. M. Darrin, A. Samudre, M. Sahun, S. Atwell, C. Badens, A. Charrier, E. Helfer, A. Viallat, V. Cohen-Addad, and S. Giffard-Roisin, Scientific Reports 13, 745 (2023). https://doi.org/10.1038/s41598-023-27718-w
- Light-inducible T cell engagers trigger, tune, and shape the activation of primary T cells. Morgane Jaeger, Amandine Anastasio, Léa Chamy, Sophie Brustlein, Renaud Vincentelli, Fabien Durbesson, Julien Gigan, Morgane Thépaut, Rémy Char, Maud Boussand, Mathias Lechelon, Rafael J. Argüello, Didier Marguet, Hai-Tao He, Rémi Lasserre. PNAS 2023 Sep 18. doi: https://doi.org/10.1101/2022.04.15.488452.
- Prolonged dysbiosis and altered immunity under nutritional intervention in a physiological mouse model of severe acute malnutrition. Fanny Hidalgo-Villeda, Matthieu Million, Catherine Defoort, Thomas Vannier, Ljubica Svilar, Margaux Lagier, Camille Wagner, Cynthia Arroyo-Portilla, Lionel Chasson, Cécilia Luciani, Vincent Bossi, Jean-Pierre Gorvel, Hugues Lelouard, Julie Tomas. iScience 2023 jun 16. doi: https://doi.org/10.1016/j.isci.2023.106910
- Epithelial disruption drives mesendoderm differentiation in human pluripotent stem cells by enabling TGF-β protein sensing. Thomas Legier, Diane Rattier, Jack Llewellyn, Thomas Vannier, Benoit Sorre, Flavio Maina & Rosanna Dono. Nature Communications 2023 Jan 21. doi: https://doi.org/10.1038/s41467-023-35965-8.
- Meisosomes, folded membrane microdomains between the apical extracellular matrix and epidermis. Dina Aggad, Nicolas Brouilly, Shizue Omi, Clara Luise Essmann, Benoit Dehapiot, Cathy Savage-Dunn, Fabrice Richard, Chantal Cazevieille, Kristin A Politi, David H Hall, Remy Pujol, Nathalie Pujol. eLife 2023 Mar 13. doi: https://doi.org/10.7554/eLife.75906
- Probing mechanical interaction of immune receptors and cytoskeleton by membrane nanotube extraction. Manca, F., Eich, G., N’Dao, O. et al. Sci Rep 13, 15652 (2023). https://doi.org/10.1038/s41598-023-42599-9
- Pathogen metabolite checkpoint: NHR on guard. Rejane Rua, Nathalie Pujol. Immunity 2023 Apr 11;56(4):744-746. doi: 10.1016/j.immuni.2023.03.004
- Curvature gradient drives polarized tissue flow in the Drosophila embryo. Emily W. Gehrels, Bandan Chakrabortty, Marc-Eric Perrin, Matthias Merkel, Thomas Lecuit. February 1, 2023 120 (6) e2214205120 https://doi.org/10.1073/pnas.2214205120
- Structure and Rheology in Vertex Models under Cell-Shape-Dependent Active Stresses. Shao-Zhen Lin, Matthias Merkel, and Jean-François Rupprecht. Phys. Rev. Lett. 130, 058202, https://doi.org/10.1103/PhysRevLett.130.058202
- Soft matter roadmap. Jean-Louis Barrat, Emanuela Del Gado, Stefan U Egelhaaf, Matthias Merkel, Pierre Ronceray and Jean-François Rupprecht. Journal of Physics: Materials, Volume 7, Number 1. DOI 10.1088/2515-7639/ad06cc
- Influence of storage and buffer composition on the mechanical behavior of flowing red blood cells. Merlo A, Losserand S, Yaya F, Connes P, Faivre M, Lorthois S, Minetti C, Nader E, Podgorski T, Renoux C, Coupier G, Franceschini E, Biophys J. 2023; 122(2):360-373. doi:10.1016/j.bpj.2022.12.005
- Hyper-cores promote localization and efficient seeding in higher-order processes. Marco Mancastroppa, Iacopo Iacopini, Giovanni Petri, Alain Barrat. Commun. 14, 6223 (2023) https://doi.org/10.1038/s41467-023-41887-2
- Distinguishing simple and complex contagion processes on networks. Giulia Cencetti, Diego Andrés Contreras, Marco Mancastroppa, Alain Barrat. Phy. Rev. Lett. 130, 247401 (2023). https://doi.org/10.1103/PhysRevLett.130.247401
- Contact networks have small metric backbones that maintain community structure and are primary transmission subgraphs. Rion Brattig Correia, Alain Barrat, Luis M. Rocha. PLoS Comput Biol 19(2): e1010854 (2023) https://doi.org/10.1371/journal.pcbi.1010854
- Inferring cell cycle phases from a partially temporal network of protein interactions. Maxime Lucas, Arthur Morris, Alex Townsend-Teague, Laurent Tichit, Bianca H Habermann, Alain Barrat. Cell Reports Methods 3, 100397 (2023) https://doi.org/10.1016/j.crmeth.2023.100397
- A gut meta-interactome map reveals modulation of human immunity by microbiome effectors. Veronika Young, Bushra Dohai, Thomas C. A. Hitch, Patrick Hyden, Christine Brun, et al. bioRxiv. doi: https://doi.org/10.1101/2023.09.25.559292
- mimicINT: a workflow for microbe-host protein interaction inference. Sébastien A. Choteau, Marceau Cristianini, Kevin Maldonado, Lilian Drets, Mégane Boujeant, Christine Brun, Lionel Spinelli, Andreas Zanzoni. bioRxiv. doi: https://doi.org/10.1101/2022.11.04.515250
- Modulation of human kinase activity through direct interaction with SARS-CoV-2 proteins. Bettina Halwachs, Christina S. Moesslacher, Johanna M. Kohlmayr, Sandra Fasching, Sarah Masser, Sébastien A. Choteau, Andreas Zanzoni, Natalia Kunowska, Ulrich Stelzl. bioRxiv. doi: https://doi.org/10.1101/2023.11.27.568816
- Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis. Sampath Kumar, A., Tian, L., Bolondi, A., Guignard L. et al. Nat Genet 55, 1176–1185 (2023). https://doi.org/10.1038/s41588-023-01435-6
- Random Walk with Restart on multilayer networks: from node prioritisation to supervised link prediction and beyond. A. Baptista, G. Brière, A. Baudot. bioRxiv. doi: https://doi.org/10.1101/2023.10.18.562848
- Zoo Guide to Network Embedding. A. Baptista, R. J. Sanchez-Garcia, A. Baudot, G. Bianconi. Arxiv. https://doi.org/10.48550/arXiv.2305.03474
- Transit time theory for a droplet passing through a slit in pressure-driven low Reynolds-number flows. S. W. Borbas, K. Shen, C. Ji, A. Viallat, E. Helfer, Z. Peng. Micromachines 14, 2040 (2023). https://doi.org/10.3390/mi14112040
- Physical mechanisms of red blood cell splenic filtration. A. Moreau, F. Yaya, H. Lu, A. Surendranath, A. Charrier, B. Dehapiot, E. Helfer, A. Viallat, Z. Peng. Proceedings of the National Academy of Sciences 120, e2300095120 (2023). https://doi.org/10.1073/pnas.2300095120
- ShIVA: a user-friendly and interactive interface giving biologists control over their single-cell RNA-seq data. Rudy Aussel, Muhammad Asif, Sabrina Chenag, Sébastien Jaeger, Pierre Milpied & Lionel Spinelli. Sci Rep 13, 14377 (2023). https://doi.org/10.1038/s41598-023-40959-z
- Enhanced cell viscosity: A new phenotype associated with lamin A/C alterations. Cécile Jebane, Alice-Anaïs Varlet, Marc Karnat, Lucero M. Hernandez- Cedillo, Amélie Lecchi, Frédéric Bedu, Camille Desgrouas, Corinne Vigouroux, Marie-Christine Vantyghem, Annie Viallat, Jean-François Rupprecht, Emmanuèle Helfer, Catherine Badens, iScience Volume 26, ISSUE 10, 107714. https://doi.org/10.1016/j.isci.2023.107714
- Body stiffness is a mechanical property that facilitates contact-mediated mate recognition in Caenorhabditis elegans. Jen-Wei Weng, Heenam Park, Claire Valotteau, Rui-Tsung Chen, Clara L. Essmann, Nathalie Pujol, Paul W. Sternberg, Chun-Hao Chen. Curr Biol. 2023 Jul 28;S0960-9822(23)00927-2. https://doi.org/10.1016/j.cub.2023.07.020
- Prominent in vivo influence of single interneurons in the developing barrel cortex. Bollmann, Y., Modol, L., Tressard, T., Cossart, R., et al., Nat Neurosci 26, 1555–1565 (2023). https://doi.org/10.1038/s41593-023-01405-5
- Alcanivorax borkumensis biofilms enhance oil degradation by interfacial tubulation. M. Prasad, N. Obana, S.-Z. Lin, Jean-François Rupprecht et al., Science 381, 748-753 (2023). DOI: 10.1126/science.adf3345
- Analytical theory for a droplet squeezing through a circular pore in creeping flows under constant pressures. Zhengxin Tang (唐正昕), François Yaya, Ethan Sun, Lubna Shah, Jie Xu, Annie Viallat, Emmanuèle Helfer, Zhangli Peng (彭张立). Physics of Fluids 35, 082016 (2023), https://doi.org/10.1063/5.0156349
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